Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-86/megassr/results/hub_GCA_054648395.1/fasta/hub_GCA_054648395.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              39
Total size of examined sequences (bp):           1794972
Total number of identified SSRs:                 26
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	3
4	2
5	11
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
ATT	-	-	1	1
GAT	-	-	1	1
TGG	-	-	1	1
ATTT	-	1		1
TAAT	-	1		1
AAAAC	1			1
AATAT	1			1
ATAAA	2			2
ATGCG	1			1
TAATT	1			1
TATTT	1			1
TTAAA	1			1
TTATA	2			2
TTGCT	1			1
AAACCA	1			1
AAAGCA	1			1
AAATCA	2			2
AGAAAA	1			1
CTTTAG	2			2
GCATAA	1			1
GCGGTG	1			1
TATTTT	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAT/ATT	-	-	1	1
ACC/GGT	-	-	1	1
ATC/ATG	-	-	1	1
AAAT/ATTT	-	1		1
AATT/AATT	-	1		1
AAAAC/GTTTT	1			1
AAAAT/ATTTT	3			3
AAAGC/CTTTG	1			1
AAATT/AATTT	2			2
AATAT/ATATT	3			3
ATCGC/ATGCG	1			1
AAAAAG/CTTTTT	1			1
AAAAAT/ATTTTT	1			1
AAAACC/GGTTTT	1			1
AAAAGC/CTTTTG	1			1
AAAATC/ATTTTG	2			2
AAAGCT/AGCTTT	2			2
AAGCAT/ATGCTT	1			1
ACCGCC/CGGTGG	1			1
