Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-73/megassr/results/hub_GCA_054648355.1/fasta/hub_GCA_054648355.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              49
Total size of examined sequences (bp):           1848948
Total number of identified SSRs:                 18
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
5	4
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	1	1
TC	-	-	-	1	1
ATA	-	-	1		1
TTATT	1				1
TTTCT	1				1
TTTTA	1	1			2
AAAGCT	2				2
ATTTAA	1				1
CACGGA		1			1
CTTTAG	2				2
GAAAAA	1				1
TAAATT	1				1
TTTAAA	1				1
TTTTTC	1				1
TTTTTG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	1	1
AT/AT	-	-	-	1	1
AAT/ATT	-	-	1		1
AAAAG/CTTTT	1				1
AAAAT/ATTTT	2	1			3
AAAAAC/GTTTTT	1				1
AAAAAG/CTTTTT	2				2
AAAGCT/AGCTTT	4				4
AAATTT/AAATTT	3				3
ACACGG/CCGTGT		1			1
