Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-84/megassr/results/hub_GCA_054648215.1/fasta/hub_GCA_054648215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              63
Total size of examined sequences (bp):           1896510
Total number of identified SSRs:                 24
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	3
5	8
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AG	-	-	-						1	1
ATA	-	-	1							1
CAT	-	-	1							1
TGG	-	-	1							1
AAAT	-	1								1
GCGT	-	1								1
TAAT	-	1								1
AAAAC	1									1
AATAT	1									1
ATAAA	1									1
TAATT	1									1
TATTT	1									1
TTAAA	1									1
TTATA	1									1
TTTAT	1									1
AAACCA	1									1
AAAGCA	1									1
AAATCA	2									2
GAAAAA	1									1
GCGGTG		1								1
TTATGC	1									1
TTTATC	1									1
TTTTTC	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AG/CT	-	-	-						1	1
AAT/ATT	-	-	1							1
ACC/GGT	-	-	1							1
ATC/ATG	-	-	1							1
AAAT/ATTT	-	1								1
AATT/AATT	-	1								1
ACGC/CGTG	-	1								1
AAAAC/GTTTT	1									1
AAAAT/ATTTT	3									3
AAATT/AATTT	2									2
AATAT/ATATT	2									2
AAAAAG/CTTTTT	2									2
AAAACC/GGTTTT	1									1
AAAAGC/CTTTTG	1									1
AAAATC/ATTTTG	2									2
AAAGAT/ATCTTT	1									1
AAGCAT/ATGCTT	1									1
ACCGCC/CGGTGG		1								1
