Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-79/megassr/results/hub_GCA_054648055.1/fasta/hub_GCA_054648055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              61
Total size of examined sequences (bp):           2051003
Total number of identified SSRs:                 31
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	2
5	12
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
TA	-	-	-	1				1
ATT	-	-	1					1
TGG	-	-	1					1
TTC	-	-					1	1
ATTT	-	1						1
CACG	-	1						1
AATAT	1							1
ATAAA	2							2
ATGCG	1							1
GAAAA	1							1
GTTTT	1							1
TAATT	1							1
TATAA	1							1
TATTT	1							1
TTATA	1							1
TTTAA	1							1
TTTTC	1							1
AAACCA	1							1
AAAGCA	1							1
AAATCA	1							1
AGAAAA	1							1
ATTTTT	1							1
CTTTAG	1							1
GAAAAA	1							1
GCATAA	1							1
GCGGTG	1							1
GCTAAA	1							1
TATTTT	1							1
TGATTT	1							1
TTTATC	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	1				1
AAG/CTT	-	-					1	1
AAT/ATT	-	-	1					1
ACC/GGT	-	-	1					1
AAAT/ATTT	-	1						1
ACGC/CGTG	-	1						1
AAAAC/GTTTT	1							1
AAAAG/CTTTT	2							2
AAAAT/ATTTT	3							3
AAATT/AATTT	2							2
AATAT/ATATT	3							3
ATCGC/ATGCG	1							1
AAAAAG/CTTTTT	2							2
AAAAAT/ATTTTT	2							2
AAAACC/GGTTTT	1							1
AAAAGC/CTTTTG	1							1
AAAATC/ATTTTG	2							2
AAAGAT/ATCTTT	1							1
AAAGCT/AGCTTT	2							2
AAGCAT/ATGCTT	1							1
ACCGCC/CGGTGG	1							1
