Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-74/megassr/results/hub_GCA_054647855.1/fasta/hub_GCA_054647855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              94
Total size of examined sequences (bp):           2071069
Total number of identified SSRs:                 26
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	2
5	11
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AG	-	-	-											1	1
AT	-	-	-	1											1
ATA	-	-	1												1
TGG	-	-	1												1
ATTT	-	1													1
GCGT	-	1													1
AAAAC	1														1
AATAT		1													1
ATAAA	2														2
ATGCG	1														1
TAATT	1														1
TATAA	1														1
TATTT	1														1
TTAAA	1														1
TTATA	1														1
TTTTC	1														1
AAACCA	1														1
AAATCA	1														1
AGAAAA	1														1
CTTTTT	1														1
GCATAA	1														1
GCGGTG	1														1
TGATTT	1														1
TGCTTT	1														1
TTTATC	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AG/CT	-	-	-											1	1
AT/AT	-	-	-	1											1
AAT/ATT	-	-	1												1
ACC/GGT	-	-	1												1
AAAT/ATTT	-	1													1
ACGC/CGTG	-	1													1
AAAAC/GTTTT	1														1
AAAAG/CTTTT	1														1
AAAAT/ATTTT	3														3
AAATT/AATTT	2														2
AATAT/ATATT	2	1													3
ATCGC/ATGCG	1														1
AAAAAG/CTTTTT	2														2
AAAACC/GGTTTT	1														1
AAAAGC/CTTTTG	1														1
AAAATC/ATTTTG	2														2
AAAGAT/ATCTTT	1														1
AAGCAT/ATGCTT	1														1
ACCGCC/CGGTGG	1														1
