Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-53/megassr/results/hub_GCA_054647695.1/fasta/hub_GCA_054647695.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              34
Total size of examined sequences (bp):           1852215
Total number of identified SSRs:                 15
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	6
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	total
AAAAT	1	1
TTTAA	2	2
TTTCT	1	1
TTTTA	2	2
AAAGCT	2	2
AGAAAA	1	1
ATTAAT	1	1
ATTTAA	1	1
TAGCTT	1	1
TTTAAA	1	1
TTTTTC	1	1
TTTTTG	1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	total
AAAAG/CTTTT	1	1
AAAAT/ATTTT	3	3
AAATT/AATTT	2	2
AAAAAC/GTTTTT	1	1
AAAAAG/CTTTTT	2	2
AAAGCT/AGCTTT	3	3
AAATTT/AAATTT	2	2
AATATT/AATATT	1	1
