Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-72/megassr/results/hub_GCA_054647085.1/fasta/hub_GCA_054647085.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              83
Total size of examined sequences (bp):           2012549
Total number of identified SSRs:                 28
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	2
5	13
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CT	-	-	-					1	1
ATA	-	-	1						1
TGG	-	-	1						1
ATTT	-	1							1
GCGT	-	1							1
AAAAC	1								1
AAAAT	1								1
AATAT		1							1
ATAAA	3								3
ATGCG	1								1
TAATT	1								1
TATAA	1								1
TATTT	1								1
TTAAA	1								1
TTATA	1								1
TTTTC	1								1
AAACCA	1								1
AAAGCA	1								1
AGAAAA	1								1
CTTTAG	1								1
GAAAAA	1								1
GCATAA	1								1
GCGGTG	1								1
TATTTT	1								1
TGATTT	1								1
TTTATC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AG/CT	-	-	-					1	1
AAT/ATT	-	-	1						1
ACC/GGT	-	-	1						1
AAAT/ATTT	-	1							1
ACGC/CGTG	-	1							1
AAAAC/GTTTT	1								1
AAAAG/CTTTT	1								1
AAAAT/ATTTT	5								5
AAATT/AATTT	2								2
AATAT/ATATT	2	1							3
ATCGC/ATGCG	1								1
AAAAAG/CTTTTT	2								2
AAAAAT/ATTTTT	1								1
AAAACC/GGTTTT	1								1
AAAAGC/CTTTTG	1								1
AAAATC/ATTTTG	1								1
AAAGAT/ATCTTT	1								1
AAAGCT/AGCTTT	1								1
AAGCAT/ATGCTT	1								1
ACCGCC/CGGTGG	1								1
