Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-52/megassr/results/hub_GCA_054647075.1/fasta/hub_GCA_054647075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              27
Total size of examined sequences (bp):           1874306
Total number of identified SSRs:                 15
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
5	6
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-		1	1
TC	-	-	-	1		1
AAAAT	2					2
GCTTT	1					1
TTTCT	1					1
TTTTA	2					2
AAAGCT	2					2
ATTTAA	1					1
CTTTTT	1					1
TTTAAA	1					1
TTTTTC	1					1
TTTTTG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	1		1
AT/AT	-	-	-		1	1
AAAAG/CTTTT	1					1
AAAAT/ATTTT	4					4
AAAGC/CTTTG	1					1
AAAAAC/GTTTTT	1					1
AAAAAG/CTTTTT	2					2
AAAGCT/AGCTTT	2					2
AAATTT/AAATTT	2					2
