Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-22/megassr/results/hub_GCA_053004905.1/fasta/hub_GCA_053004905.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              13
Total size of examined sequences (bp):           2791445
Total number of identified SSRs:                 19
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	6
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	2	2	4
AAG	-	-	2			2
ATT	-	-	1			1
GAA	-	-	2			2
TGA	-	-	1			1
AAATT	1					1
AATTT		1				1
TGTTG	1					1
TTATT	1					1
CAAAAG	1					1
TTCATC	1					1
TTTATT	1					1
TTTGAT	1					1
TTTTAT	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	2	2	4
AAG/CTT	-	-	4			4
AAT/ATT	-	-	1			1
ATC/ATG	-	-	1			1
AAAAT/ATTTT	1					1
AAATT/AATTT	1	1				2
AACAC/GTGTT	1					1
AAAAAT/ATTTTT	2					2
AAAAGC/CTTTTG	1					1
AAAATC/ATTTTG	1					1
AAGATG/ATCTTC	1					1
