Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-24/megassr/results/hub_GCA_052623675.1/fasta/hub_GCA_052623675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              32
Total size of examined sequences (bp):           4897478
Total number of identified SSRs:                 20
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
4	1
5	2
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	2	2
GC	-	-	-	1	1
CAG	-	-	1		1
CCG	-	-	1		1
CGC	-	-	1		1
CGG	-	-	1		1
GCC	-	-	1		1
GCT	-	-	1		1
GGC	-	-	1		1
GCCA	-	1			1
CGCGC	1				1
GGCGC	1				1
CGACTT	1				1
CTGGCG	1				1
GCCACC	1				1
GCCAGC	1				1
GCCCCA	1				1
TACGCT	1				1
TGGGGC			1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	3	3
AGC/CTG	-	-	2		2
CCG/CGG	-	-	5		5
AGCC/CTGG	-	1			1
CCGCG/CGCGG	2				2
AAGCGT/ACGCTT	1				1
AAGTCG/ACTTCG	1				1
ACCGCC/CGGTGG	1				1
AGCCCC/CTGGGG	1		1		2
AGCGCC/CGCTGG	2				2
