Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-16/megassr/results/hub_GCA_052623215.1/fasta/hub_GCA_052623215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              34
Total size of examined sequences (bp):           4815095
Total number of identified SSRs:                 22
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	6
4	2
5	2
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	1							1
GC	-	-	-	2							2
CAG	-	-	1								1
CCG	-	-	1								1
GCC	-	-	1								1
GCG	-	-	1								1
GCT	-	-	1								1
GGC	-	-	1								1
CAAG	-	1									1
GCCA	-	1									1
CGCGC	1										1
GGCGC	1										1
CGACTT	1										1
CTGGCG	1										1
CTTCAT	1										1
GAACAG										1	1
GCCACC				1							1
GCCAGC	1										1
GCCCCA		1									1
TACGCT	1										1
TGGGGC			1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	3							3
AGC/CTG	-	-	2								2
CCG/CGG	-	-	4								4
AAGC/CTTG	-	1									1
AGCC/CTGG	-	1									1
CCGCG/CGCGG	2										2
AACAGG/CCTGTT										1	1
AAGATG/ATCTTC	1										1
AAGCGT/ACGCTT	1										1
AAGTCG/ACTTCG	1										1
ACCGCC/CGGTGG				1							1
AGCCCC/CTGGGG		1	1								2
AGCGCC/CGCTGG	2										2
