Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-13/megassr/results/hub_GCA_052623095.1/fasta/hub_GCA_052623095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              36
Total size of examined sequences (bp):           4894980
Total number of identified SSRs:                 22
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
4	2
5	2
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG	-	-	-	1											1
GC	-	-	-	2											2
CAG	-	-	1												1
CCG	-	-	1												1
CGG	-	-	1												1
GCC	-	-	1												1
GCG	-	-	1												1
GCT	-	-	1												1
GGC	-	-	1												1
GCCA	-	2													2
CGCGC	1														1
GGCGC	1														1
CGACTT	1														1
CTGGCG	1														1
GAACAG														1	1
GCCACC		1													1
GCCAGC	1														1
GCCCCA	1														1
TACGCT	1														1
TGGGGC	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG/CG	-	-	-	3											3
AGC/CTG	-	-	2												2
CCG/CGG	-	-	5												5
AGCC/CTGG	-	2													2
CCGCG/CGCGG	2														2
AACAGG/CCTGTT														1	1
AAGCGT/ACGCTT	1														1
AAGTCG/ACTTCG	1														1
ACCGCC/CGGTGG		1													1
AGCCCC/CTGGGG	2														2
AGCGCC/CGCTGG	2														2
