Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-9/megassr/results/hub_GCA_052622895.1/fasta/hub_GCA_052622895.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              34
Total size of examined sequences (bp):           4931703
Total number of identified SSRs:                 21
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	6
4	1
5	2
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	1						1
GC	-	-	-	2						2
CAG	-	-		1						1
CCG	-	-	1							1
GCC	-	-	1							1
GCG	-	-	1							1
GCT	-	-	1							1
GGC	-	-	1							1
GCCA	-	1								1
CGCGC	1									1
GGCGC	1									1
CGACTT	1									1
CTGGCG	1									1
CTTCAT	1									1
GAACAG									1	1
GCCACC				1						1
GCCAGC	1									1
GCCCCA		1								1
TACGCT	1									1
TGGGGC			1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	3						3
AGC/CTG	-	-	1	1						2
CCG/CGG	-	-	4							4
AGCC/CTGG	-	1								1
CCGCG/CGCGG	2									2
AACAGG/CCTGTT									1	1
AAGATG/ATCTTC	1									1
AAGCGT/ACGCTT	1									1
AAGTCG/ACTTCG	1									1
ACCGCC/CGGTGG				1						1
AGCCCC/CTGGGG		1	1							2
AGCGCC/CGCTGG	2									2
