Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-6/megassr/results/hub_GCA_052622775.1/fasta/hub_GCA_052622775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           4856644
Total number of identified SSRs:                 21
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	6
4	1
5	2
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	1									1
GC	-	-	-	2									2
CAG	-	-	1										1
CCG	-	-	1										1
GCC	-	-	1										1
GCG	-	-	1										1
GCT	-	-	1										1
GGC	-	-	1										1
GCCA	-	1											1
CGCGC	1												1
GGCGC	1												1
CGACTT	1												1
CTGGCG	1												1
CTTCAT	1												1
GAACAG												1	1
GCCACC					1								1
GCCAGC	1												1
GCCCCA		1											1
TACGCT	1												1
TGGGGC			1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	3									3
AGC/CTG	-	-	2										2
CCG/CGG	-	-	4										4
AGCC/CTGG	-	1											1
CCGCG/CGCGG	2												2
AACAGG/CCTGTT												1	1
AAGATG/ATCTTC	1												1
AAGCGT/ACGCTT	1												1
AAGTCG/ACTTCG	1												1
ACCGCC/CGGTGG					1								1
AGCCCC/CTGGGG		1	1										2
AGCGCC/CGCTGG	2												2
