Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-20/megassr/results/hub_GCA_052491075.1/fasta/hub_GCA_052491075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              29
Total size of examined sequences (bp):           2615383
Total number of identified SSRs:                 14
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	1
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-			1	1
GCA	-	-	1				1
TATTT		1					1
AATTTT	1						1
CAGATG	1						1
GATGCA	5	1					6
GCAGAT		1					1
GCCGAT	1	1					2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-			1	1
AGC/CTG	-	-	1				1
AAAAT/ATTTT		1					1
AAAATT/AATTTT	1						1
AGATGC/ATCTGC	6	2					8
ATCGGC/ATGCCG	1	1					2
