Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-19/megassr/results/hub_GCA_051842635.1/fasta/hub_GCA_051842635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              9
Total size of examined sequences (bp):           2762619
Total number of identified SSRs:                 69
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    26


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	53
2	2
3	6
5	5
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	4	4	4	3		2	3	1	1	2	2		2				2		1							1			1		1										1		1																																																			1		1			1								1	45
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1		2		1				1						1																																1																																																							1						8
AT	-	-	-	1	1																																																																																																																									2
AAT	-	-	1																																																																																																																											1
AGA	-	-	1																																																																																																																											1
GAA	-	-	2																																																																																																																											2
TGA	-	-	1																																																																																																																											1
TTC	-	-	1																																																																																																																											1
AAATT	1																																																																																																																													1
AATTT		1																																																																																																																												1
TGTTG	1																																																																																																																													1
TTAAT	1																																																																																																																													1
TTATT	1																																																																																																																													1
TTCATC	1																																																																																																																													1
TTTGAT	1																																																																																																																													1
TTTTAT	1																																																																																																																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	5	4	6	3	1	2	3	1	2	2	2		2		1		2		1							1			1		1										1		1				1																																															1		1			1			1					1	53
AT/AT	-	-	-	1	1																																																																																																																									2
AAG/CTT	-	-	4																																																																																																																											4
AAT/ATT	-	-	1																																																																																																																											1
ATC/ATG	-	-	1																																																																																																																											1
AAAAT/ATTTT	1																																																																																																																													1
AAATT/AATTT	2	1																																																																																																																												3
AACAC/GTGTT	1																																																																																																																													1
AAAAAT/ATTTTT	1																																																																																																																													1
AAAATC/ATTTTG	1																																																																																																																													1
AAGATG/ATCTTC	1																																																																																																																													1
