Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-16/megassr/results/hub_GCA_050632965.1/fasta/hub_GCA_050632965.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              151
Total size of examined sequences (bp):           4194484
Total number of identified SSRs:                 33
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	8
5	4
6	18

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AG	-	-	-					1		1
GA	-	-	-	1					1	2
AGA	-	-	1							1
CCA	-	-	1							1
CCG	-	-	1							1
CTG	-	-	2							2
GCC	-	-	1							1
GGC	-	-	1							1
GTG	-	-	1							1
GCAGA									1	1
GGTGA	1									1
TGGCC	1									1
TGGCT	1									1
ATGGTC							1			1
CACCGG	1									1
CAGACG	1									1
CAGAGC			1							1
CCGGAG	1									1
CGCTGG	1									1
CGGTGC	1									1
CTCCTG							1		1	2
GCCTGT								1		1
GCTGGC	1									1
GGATCT	1									1
GGGGCA	1									1
GTCATG	1									1
GTCGGG	1									1
TGGTCA		1								1
TGTGCC							1			1
TTGGGC		1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AG/CT	-	-	-	1				1	1	3
AAG/CTT	-	-	1							1
ACC/GGT	-	-	2							2
AGC/CTG	-	-	2							2
CCG/CGG	-	-	3							3
AAGCC/CTTGG	1									1
ACCTC/AGGTG	1									1
AGAGC/CTCTG									1	1
AGGCC/CCTGG	1									1
AAGCCC/CTTGGG		1								1
ACAGGC/CCTGTG							1	1		2
ACCATG/ATGGTC	1	1					1			3
ACCCCG/CGGGGT	1									1
ACCGGC/CCGGTG	2									2
ACGCAG/CGTCTG	1									1
AGAGCC/CTCTGG			1							1
AGATCC/ATCTGG	1									1
AGCAGG/CCTGCT							1		1	2
AGCCGG/CCGGCT	1									1
AGCGCC/CGCTGG	2									2
AGGGGC/CCCCTG	1									1
