Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-19/megassr/results/hub_GCA_050230985.1/fasta/hub_GCA_050230985.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              16248
Total size of examined sequences (bp):           11222968
Total number of identified SSRs:                 331
Number of SSR containing sequences:              304
Number of sequences containing more than 1 SSR:  18
Number of SSRs present in compound formation:    21


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	45
3	46
4	54
5	120
6	65

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
AC	-	-	-	1	2		1													4
AG	-	-	-	2	2		1	1												6
AT	-	-	-	5		1	1			1										8
CA	-	-	-	1	1															2
CT	-	-	-	1		1														2
GA	-	-	-	2		1														3
GT	-	-	-				2	1												3
TA	-	-	-	5	2	1														8
TC	-	-	-	1	1		2	1												5
TG	-	-	-	1	1	2														4
AAC	-	-	1																	1
AAG	-	-	3		1															4
AAT	-	-	1	1	1															3
AGA	-	-	1		1	1														3
ATG	-	-	1	1																2
ATT	-	-	1	1																2
CCA	-	-		1																1
CTG	-	-			1															1
CTT	-	-	1	3																4
GAA	-	-	1	1		1														3
GAT	-	-	1																	1
GTT	-	-	1	1																2
TAA	-	-	3																	3
TCT	-	-	2																	2
TGA	-	-	1																	1
TTA	-	-	2	4	1	1														8
TTC	-	-	2	2	1															5
AAAT	-	1	2																	3
AACC	-	1																		1
AACT	-	2	1	2																5
AATA	-	3																		3
ACTT	-	2																		2
AGAT	-	1																		1
ATAA	-	1	1	1																3
ATCA	-	1																		1
ATCT	-	1																		1
ATTA	-	2																		2
ATTT	-	5																		5
CGCA	-	1																		1
CTCG	-	1																		1
CTTA	-	1																		1
GAAG	-			1																1
GTTG	-	1																		1
TAAA	-	3																		3
TAAG	-	1																		1
TAAT	-	1																		1
TACT	-	1																		1
TATT	-		2																	2
TTAA	-	2																		2
TTAC	-		1																	1
TTAG	-	2	1	2																5
TTAT	-					1														1
TTCG	-	1																		1
TTCT	-	1																		1
TTGA	-		1																	1
TTGG	-	1																		1
TTTA	-		1																	1
AAAAC	2																			2
AAAAT	4																			4
AAACT		1																		1
AAAGT	1																			1
AAATA	2																			2
AAATC	1																			1
AAATT	2																			2
AACAA	1																			1
AAGCC		1																		1
AAGGC	1																			1
AATAA	1																			1
AATTA	4																			4
AATTT	5	1																		6
ACTAA	1																			1
ACTGC	1																			1
ACTTA	1																			1
AGAAA	2																			2
AGAAG	1																			1
AGACA	1																			1
AGGGG	1																			1
AGTTT	1																			1
ATAAA		1																		1
ATACC	1																			1
ATAGT	1																			1
ATATA		1																		1
ATCTA	1																			1
ATTAA	2																			2
ATTTC	1																			1
ATTTT	3																			3
CAATT	1																			1
CTTAT	1																			1
CTTTT	1																			1
GAAAT	2																			2
GAAGT	1																			1
GAATG		1	1																	2
GATAA	1																			1
GATTT	1																			1
GGAAT				1																1
GTTCA	1																			1
TAAAA	3																			3
TAAGC	1																			1
TAATA	2																			2
TATAT	1																			1
TATCA	1																			1
TATTA	2																			2
TATTT	1	2																		3
TCAAA	1																			1
TCAAG	1																			1
TCAGT	1																			1
TCATA	1																			1
TCTTG	1																			1
TGTTA	1																			1
TTAAA	5	1																		6
TTAAT	3																			3
TTATT	1																			1
TTCAA	1																			1
TTCAG	1																			1
TTCTT	4																			4
TTGTT	1																			1
TTTAA	5																			5
TTTAG	2																			2
TTTAT	6																			6
TTTCT	2																			2
TTTGC	2																			2
TTTTA	8																			8
AAAACT	1																			1
AAAAGA	1																			1
AAACAC	1																			1
AAAGTA	1																			1
AAATAT	1																			1
AACTAA	2																			2
AATAAA	1																			1
AATAGA	1																			1
AATAGT	1		2																	3
AATTTT	1																			1
ACGACT	1																			1
ACGGTA	3																			3
ACTATT	1						1													2
ACTTTC	1																			1
AGTAAT	1																			1
AGTTTT	2																			2
ATAGTG	1																			1
ATATGT	1																			1
ATCATA	1																			1
ATTTTA	2																			2
ATTTTT	1																			1
CATCTT	1																			1
CTATTA	1																			1
CTGTGG	1																			1
GAAAAA	1																			1
GCCTAA	1																			1
GCGTGT			1																	1
GTCACT	1																			1
GTTTTT	1																			1
TAAAAA	1																			1
TAAAAC	1																			1
TAAAAT	2																			2
TAAATT	1																			1
TACTAA				1																1
TCAGCA	1																			1
TGAAAA	1																			1
TTAAAA	1																			1
TTAATT	1																			1
TTAGTT	1																			1
TTATTT	2																			2
TTCTTA	1																			1
TTCTTT	1																			1
TTGGCA	1																			1
TTTAAC	1																			1
TTTATT	1																			1
TTTTAA	3																			3
TTTTAC	4																			4
TTTTAG	1																			1
TTTTCA	1																			1
TTTTTA	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
AC/GT	-	-	-	3	4	2	3	1												13
AG/CT	-	-	-	6	3	2	3	2												16
AT/AT	-	-	-	10	2	2	1			1										16
AAC/GTT	-	-	2	1																3
AAG/CTT	-	-	10	6	3	2														21
AAT/ATT	-	-	7	6	2	1														16
ACC/GGT	-	-		1																1
AGC/CTG	-	-			1															1
ATC/ATG	-	-	3	1																4
AAAG/CTTT	-	1																		1
AAAT/ATTT	-	13	6	1		1														21
AACC/GGTT	-	3																		3
AACG/CGTT	-	1																		1
AACT/AGTT	-	4	2	4																10
AAGG/CCTT	-			1																1
AAGT/ACTT	-	5	1																	6
AATC/ATTG	-	1	1																	2
AATT/AATT	-	5																		5
ACGC/CGTG	-	1																		1
AGAT/ATCT	-	2																		2
AGCG/CGCT	-	1																		1
AAAAC/GTTTT	4																			4
AAAAG/CTTTT	9																			9
AAAAT/ATTTT	29	3																		32
AAACT/AGTTT	4	1																		5
AAAGC/CTTTG	2																			2
AAAGT/ACTTT	1																			1
AAATC/ATTTG	3																			3
AAATG/ATTTC	3																			3
AAATT/AATTT	26	2																		28
AACAT/ATGTT	1																			1
AACTG/AGTTC	3																			3
AACTT/AAGTT	1																			1
AAGAC/CTTGT	2																			2
AAGAG/CTCTT	1																			1
AAGAT/ATCTT	2																			2
AAGCC/CTTGG		1																		1
AAGCT/AGCTT	1																			1
AAGGC/CCTTG	1																			1
AAGTC/ACTTG	1																			1
AAGTG/ACTTC	1																			1
AATAT/ATATT	5	1																		6
AATCT/AGATT	1																			1
AATGG/ATTCC		1	1	1																3
AATTC/AATTG	2																			2
ACCAT/ATGGT	1																			1
ACTAT/AGTAT	1																			1
ACTGC/AGTGC	1																			1
AGGGG/CCCCT	1																			1
ATATC/ATATG	2																			2
AAAAAC/GTTTTT	1																			1
AAAAAG/CTTTTT	3																			3
AAAAAT/ATTTTT	7																			7
AAAACT/AGTTTT	8																			8
AAAAGT/ACTTTT	5																			5
AAAATG/ATTTTC	2																			2
AAAATT/AATTTT	10																			10
AAACAC/GTGTTT	1																			1
AAAGTG/ACTTTC	1																			1
AAAGTT/AACTTT	1																			1
AAATAG/ATTTCT	1																			1
AAATAT/ATATTT	1																			1
AAATTT/AAATTT	1																			1
AACGGT/ACCGTT	3																			3
AAGAAT/ATTCTT	1																			1
AAGATG/ATCTTC	1																			1
AAGCCT/AGGCTT	1																			1
AATACT/AGTATT				1																1
AATAGT/ACTATT	4		2				1													7
AATCAT/ATGATT	1																			1
AATGCC/ATTGGC	1																			1
ACACGC/CGTGTG			1																	1
ACAGCC/CTGTGG	1																			1
ACAGTG/ACTGTC	1																			1
ACATAT/ATATGT	1																			1
ACGACT/AGTCGT	1																			1
ACTATC/AGTGAT	1																			1
AGCATC/ATGCTG	1																			1
