Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-22/megassr/results/hub_GCA_049634785.1/fasta/hub_GCA_049634785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              10204
Total size of examined sequences (bp):           9809637
Total number of identified SSRs:                 286
Number of SSR containing sequences:              265
Number of sequences containing more than 1 SSR:  18
Number of SSRs present in compound formation:    13


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	44
3	51
4	45
5	99
6	45

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1				1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
AC	-	-	-	4																		4
AG	-	-	-	2	2		2															6
AT	-	-	-	6	3	2		1														12
CA	-	-	-			2	1															3
CG	-	-	-	1																		1
GA	-	-	-				1		1													2
GT	-	-	-	1	1																	2
TA	-	-	-	3		2	1															6
TC	-	-	-			3	1															4
TG	-	-	-	2			1	1														4
AAG	-	-	6	1		2																9
AAT	-	-	2																			2
AGA	-	-			1																	1
ATT	-	-	1	2	2																	5
CTT	-	-	1	4	1																	6
GCA	-	-		1																		1
GGC	-	-	1																			1
GTT	-	-		2																		2
TAA	-	-	4		1	1																6
TAT	-	-	2																			2
TCT	-	-	4	3	1																	8
TTA	-	-	4	1																		5
TTC	-	-	2	1																		3
AAAT	-	3																				3
AACT	-				1																	1
AATA	-	3																				3
AATT	-	1	1																			2
ACTT	-	3	1																			4
AGTG	-	1																				1
AGTT	-	1																				1
ATCA	-	1																				1
ATTA	-	1																				1
ATTC	-	1																				1
ATTT	-	3	1																			4
CGCA	-	2																				2
CTTA	-	1																				1
GGTT	-	1																				1
GTCT	-			1																		1
TAAA	-	4																				4
TAAG	-	1																				1
TAAT	-		1																			1
TATT	-	1	1																			2
TTAA	-	1	1																			2
TTAG	-			1																		1
TTAT	-	2		1																		3
TTGT	-	1																				1
TTTA	-	2																				2
TTTC	-	1																				1
AAAAT	6																					6
AAAGT	3																					3
AAATA	2																					2
AAATT	2																					2
AACTT	1																					1
AAGAA	3																					3
AATAA	2																					2
AATGG	1																					1
AATTA	1																					1
AATTT	3	1																				4
ACATT	1																					1
ACTAT	1																					1
AGACA	1																					1
AGCTT	1																					1
ATAAA	4																					4
ATACA		1																				1
ATAGT	2																					2
ATATA	1			1																		2
ATTAA	3																					3
ATTTA	1																					1
ATTTT	5																					5
CAGAC	1																					1
CTGTG	1																					1
GAAGT	1																					1
GAATT	1																					1
GCGGC	1																					1
GTAAA	1																					1
GTCGC		1																				1
GTGAT	1																					1
GTTCA	1																					1
TAAAA	3																					3
TAAAT	1	1																				2
TAAGG		1																				1
TAATA	1																					1
TAATC	1																					1
TAATG	1																					1
TATTA	1																					1
TATTT	2																					2
TCTTG	1																					1
TGAAG	1																					1
TGATA	1																					1
TGTTT	1																					1
TTAAA	3																					3
TTAAT	1																					1
TTAGT	1																					1
TTCAA	1																					1
TTCTG	1																					1
TTGTT	1																					1
TTTAA	4																					4
TTTAG	1																					1
TTTAT	1																					1
TTTCA	1																					1
TTTCT	2																					2
TTTTA	7	3																				10
AAATAA	2																					2
AAATTG	1																					1
AACAAG		1																				1
AACTAA	1																					1
AATAAA	1																					1
AATAAG	1																					1
AATAGT				1																		1
AATCTA	1																					1
AATTAA	1																					1
ACAAAT		1																				1
ACGGTA	1																					1
ATAGTG	1																					1
ATTGTA	1																					1
CAACAC	1																					1
CATTAA	1																					1
CGATTC	1																					1
CTCAAG	1																					1
CTTTCT		1																				1
GAAAAA	1																					1
GTAAAA	1																					1
GTATTT	1																					1
TAAAAC	3																					3
TAAATT	1																					1
TAAGAC	1																					1
TACCAA	1																					1
TACCGA	1																					1
TACTAT			1																			1
TAGTAT	1																					1
TATCGC	1																					1
TATGTT	1																					1
TATTCA		1																				1
TCTAAA	1																					1
TCTTTT	1																					1
TGAAAA	2																					2
TGGCTC	2																					2
TTCTCT	1																					1
TTTAAC	1																					1
TTTAAT	1																					1
TTTTAA	2																					2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			1	2
AC/GT	-	-	-	7	1	2	2	1														13
AG/CT	-	-	-	2	2	3	4		1													12
AT/AT	-	-	-	9	3	4	1	1														18
CG/CG	-	-	-	1																		1
AAC/GTT	-	-		2																		2
AAG/CTT	-	-	13	9	3	2																27
AAT/ATT	-	-	13	3	3	1																20
AGC/CTG	-	-		1																		1
CCG/CGG	-	-	1																			1
AAAC/GTTT	-	1																				1
AAAG/CTTT	-	1																				1
AAAT/ATTT	-	18	2	1																		21
AACC/GGTT	-	1																				1
AACT/AGTT	-	1		1	1																	3
AAGT/ACTT	-	5	1																			6
AATC/ATTG	-	1																				1
AATG/ATTC	-	1																				1
AATT/AATT	-	3	3																			6
ACAG/CTGT	-			1																		1
ACGC/CGTG	-	2																				2
ACTC/AGTG	-	1																				1
AAAAC/GTTTT	2																					2
AAAAG/CTTTT	5																					5
AAAAT/ATTTT	32	3																				35
AAACT/AGTTT	2																					2
AAAGT/ACTTT	4																					4
AAATG/ATTTC	1																					1
AAATT/AATTT	19	2																				21
AACAG/CTGTT	1																					1
AACTG/AGTTC	1																					1
AACTT/AAGTT	1																					1
AAGAC/CTTGT	2																					2
AAGCT/AGCTT	1																					1
AAGGT/ACCTT		1																				1
AAGTG/ACTTC	2																					2
AATAC/ATTGT		1																				1
AATAT/ATATT	3			1																		4
AATCT/AGATT	1																					1
AATGG/ATTCC	1																					1
AATGT/ACATT	2																					2
AATTC/AATTG	2																					2
ACAGC/CTGTG	1																					1
ACATC/ATGTG	1																					1
ACCAG/CTGGT	1																					1
ACGCG/CGCGT		1																				1
ACTAT/AGTAT	3																					3
ATATC/ATATG	1																					1
CCGCG/CGCGG	1																					1
AAAAAG/CTTTTT	2																					2
AAAAAT/ATTTTT	3																					3
AAAACT/AGTTTT	4																					4
AAAAGT/ACTTTT	1																					1
AAAATG/ATTTTC	2																					2
AAAATT/AATTTT	4																					4
AAACAT/ATGTTT	1																					1
AAAGAG/CTCTTT	1	1																				2
AAAGTT/AACTTT	1																					1
AAATAC/ATTTGT	1	1																				2
AAATCT/AGATTT	2																					2
AAATTG/AATTTC	1																					1
AAATTT/AAATTT	1																					1
AACAAG/CTTGTT		1																				1
AACACC/GGTGTT	1																					1
AACATT/AATGTT	1																					1
AACGGT/ACCGTT	1																					1
AAGAAT/ATTCTT	1																					1
AAGACT/AGTCTT	1																					1
AAGCTC/AGCTTG	1																					1
AATACC/ATTGGT	1																					1
AATACT/AGTATT	1																					1
AATAGT/ACTATT			1	1																		2
AATATG/ATATTC		1																				1
AATCGG/ATTCCG	1																					1
AATTAC/AATTGT	1																					1
ACCGAT/ATCGGT	1																					1
ACTATC/AGTGAT	1																					1
AGAGCC/CTCTGG	2																					2
AGCGAT/ATCGCT	1																					1
