Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-49/megassr/results/hub_GCA_048881025.1/fasta/hub_GCA_048881025.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              60
Total size of examined sequences (bp):           4909474
Total number of identified SSRs:                 40
Number of SSR containing sequences:              23
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	10
5	10
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2		2
GC	-	-	-	5	1	6
CCG	-	-	3			3
CGG	-	-	1			1
GAC	-	-	1			1
GCG	-	-	1			1
GGC	-	-	3			3
GTG	-	-	1			1
AAACA	1					1
AATTT	1					1
CAACG	1					1
CGCGA	1					1
CGCGG	1					1
GCCGT	1					1
GCGCG	1					1
GCGGC	1					1
GGCCG	1					1
GGCGT	1					1
CCACCG	1					1
CCCAAA		1				1
CCGCAG	1					1
CGCCAG	1					1
CGCTGA	1					1
CGGTGC	1					1
CTGGCG	1					1
GGCTCT			1			1
GGCTGT	1					1
TCAATA	1					1
TGCCGA	1					1
TGGCGG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	7	1	8
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1			1
CCG/CGG	-	-	8			8
AAAAC/GTTTT	1					1
AAATT/AATTT	1					1
AACGC/CGTTG	1					1
ACGCC/CGTGG	1					1
ACGCG/CGCGT	1					1
ACGGC/CCGTG	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AAACCC/GGGTTT		1				1
AATATC/ATATTG	1					1
ACAGCC/CTGTGG	1					1
ACCGCC/CGGTGG	2					2
ACCGGC/CCGGTG	1					1
ACGCTG/AGCGTC	1					1
AGAGCC/CTCTGG			1			1
AGCCGC/CGGCTG	1					1
AGCGCC/CGCTGG	2					2
ATCGGC/ATGCCG	1					1
