Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-42/megassr/results/hub_GCA_047514085.1/fasta/hub_GCA_047514085.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              86
Total size of examined sequences (bp):           5603232
Total number of identified SSRs:                 38
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	18
5	8
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1			1
CG	-	-	-	2	1		3
GC	-	-	-	1			1
CAG	-	-	1				1
CCA	-	-	1				1
CCG	-	-	2				2
CGG	-	-	4				4
CTG	-	-	3				3
GAC	-	-	1				1
GCC	-	-	1	1			2
GCG	-	-	2				2
GTC	-	-	1				1
TGC	-	-				1	1
AATAA	1						1
ATAAA	2						2
CCACG	1						1
CCCGG	1						1
CGCGG	1						1
GGCGC	2						2
CGCCCT	1						1
CTGGTG	1						1
GAAGTC	1						1
GACGAA	1						1
GAGAGT	1						1
GCTCCG		1					1
GTGGAA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	3	1		4
ACC/GGT	-	-	1				1
ACG/CGT	-	-	2				2
AGC/CTG	-	-	4			1	5
CCG/CGG	-	-	9	1			10
AAAAT/ATTTT	3						3
ACGCC/CGTGG	1						1
CCCGG/CCGGG	1						1
CCGCG/CGCGG	3						3
AAGACG/CGTCTT	1						1
AAGTCG/ACTTCG	1						1
AAGTGG/ACTTCC	1						1
ACCAGC/CTGGTG	1						1
ACTCTC/AGAGTG	1						1
AGCCGG/CCGGCT		1					1
AGGGCG/CCCTCG	1						1
