Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-40/megassr/results/hub_GCA_047514025.1/fasta/hub_GCA_047514025.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              68
Total size of examined sequences (bp):           5742310
Total number of identified SSRs:                 38
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	17
4	1
5	7
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	1		1
CG	-	-	-	2	1	3
GC	-	-	-	1		1
CAG	-	-	2			2
CCG	-	-	4			4
CGC	-	-	1			1
CGG	-	-	2	1		3
CTG	-	-	2			2
GAC	-	-	1			1
GCC	-	-	2	1		3
GCG	-	-	1			1
CCAG	-	1				1
AATAA	1					1
ATAAA	1					1
CCACG	1					1
CCCGG	1					1
CGCGG	1					1
GCTGG	1					1
GGCGC	1					1
CTGCTC			1			1
CTGGTG	1					1
GAAGTC	1					1
GACGAA	1					1
GCAGCC	1					1
GCGAAA		1				1
GCTCCG		1				1
GTGGAA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	1		1
CG/CG	-	-	-	3	1	4
ACG/CGT	-	-	1			1
AGC/CTG	-	-	4			4
CCG/CGG	-	-	10	2		12
AGCC/CTGG	-	1				1
AAAAT/ATTTT	2					2
ACGCC/CGTGG	1					1
AGCCC/CTGGG	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	2					2
AAAGCG/CGCTTT		1				1
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
AGCAGG/CCTGCT			1			1
AGCCGC/CGGCTG	1					1
AGCCGG/CCGGCT		1				1
