Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-39/megassr/results/hub_GCA_047514005.1/fasta/hub_GCA_047514005.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              50
Total size of examined sequences (bp):           5366188
Total number of identified SSRs:                 37
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	17
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	3	1	4
CT	-	-	-	1		1
GC	-	-	-	1		1
CAG	-	-	1			1
CCA	-	-	1			1
CCG	-	-	3			3
CGG	-	-	4	1		5
CTG	-	-	2			2
GAC	-	-	1			1
GCC	-	-	1	1		2
GCG	-	-	1			1
TGA	-	-	1			1
AATAA	1					1
CCACG	1					1
CCCGG	1					1
CGCGG	1					1
GGAAG	1					1
GGCGC	2					2
CACCAG	1					1
CGGTAT	1					1
GAAGTC	1					1
GACGAA	1					1
GAGAGT					1	1
GCTCCG		1				1
GTGGAA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	1		1
CG/CG	-	-	-	4	1	5
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1			1
AGC/CTG	-	-	3			3
ATC/ATG	-	-	1			1
CCG/CGG	-	-	9	2		11
AAAAT/ATTTT	1					1
AAGGG/CCCTT	1					1
ACGCC/CGTGG	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACCGAT/ATCGGT	1					1
ACTCTC/AGAGTG					1	1
AGCCGG/CCGGCT		1				1
