Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_047372865.1/fasta/hub_GCA_047372865.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              329
Total size of examined sequences (bp):           99894447
Total number of identified SSRs:                 22587
Number of SSR containing sequences:              327
Number of sequences containing more than 1 SSR:  323
Number of SSRs present in compound formation:    1925


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	35
2	2214
3	3382
4	11704
5	4106
6	1146

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	1	2								1																																																																																																																																																																																7
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	2	1																	1																																																																																																																																																																								10
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	2	1																																																																																																																																																																																									7
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2	2	5											1																																																																																																																																																																													11
AC	-	-	-	60	14	8	2	1	3	2																																																						1																													1																																																																																																																92
AG	-	-	-	48	15	7	4	2			1	1																		1																																																																																1																																																																																															80
AT	-	-	-	278	193	149	103	44	12	10	9	8	3	5	1	2	1			1																																																																																																																																																																																									819
CA	-	-	-	6	2	4	2	1																																																																																																																																																																																																					15
CT	-	-	-	23	8	1	3	4	1		1																																																																																																																																																																																																		41
GA	-	-	-	8	6	2	1																																					1																		1																						1																																																																																																																									20
GT	-	-	-	10	4	3	1			1									1																																																																																																																																																																																										20
TA	-	-	-	298	221	130	100	62	29	24	18	11	3	3	2	4	1	1	1	1																																																																																																																																																																																									909
TC	-	-	-	26	15	11	1	3	1	1				1		1																																																																																																																																																																																													60
TG	-	-	-	133	12	3	6	2		2																																																																																																																																																																																																			158
AAC	-	-	33	10	3	2		1	1																			1												1	1										1																																																																																																																																																										54
AAG	-	-	59	15	7	2	4																																																																																																																																																																																																						87
AAT	-	-	250	109	64	31	35	11	8	4	5	3	1	3	1	1	1	4	1		2	1		2	1		2					1	1					1		1				2									1				2			1						1		1																		1																																																																																																																							553
ACA	-	-	10	3	1	1	1																																																																																																																																																																																																						16
ACC	-	-	1	2																																																																																																																																																																																																									3
ACT	-	-	4	2	1																																																																																																																																																																																																								7
AGA	-	-	14	7	6	1	1		3	1															1																																																																																																																																																																																				34
AGC	-	-	2	1																																																																																																																																																																																																									3
AGG	-	-	8		1																																																																																																																																																																																																								9
AGT	-	-	3	6	3	2	2		1																																																																																																																																																																																																				17
ATA	-	-	98	51	17	10	8	6	2	3	1	4	1		1		1	1	2	3		1			1									1	1						1															1	1									1			1														1			1																																										1																																																												1																	222
ATC	-	-	36	14	10	2	1	2		2	1												1				1																																																																																																																																																																																		70
ATG	-	-	25	12	1	1	3		1	1																																																																																																																																																																																																			44
ATT	-	-	157	62	35	13	7	7	8	1	1	2	1	2	1		1	2	1						1		1		1	1		1		1					1	1							1	1						1		1					1					1		1								1	1																1	1																																				1																																																																											321
CAA	-	-	13	7	4	1							1									1																			1																																																																																																																																																																				28
CAC	-	-	3																																																																																																																																																																																																										3
CAG	-	-	1																																																																																																																																																																																																										1
CAT	-	-	12	1	1				1																																																																																																																																																																																																				15
CCA	-	-	1																																																																																																																																																																																																										1
CCT	-	-	3	1	1																																																																																																																																																																																																								5
CTA	-	-	7	5	4	3	2																																																																																																																																																																																																						21
CTG	-	-			1																																																																																																																																																																																																								1
CTT	-	-	23	10	4	2																																																																																																																																																																																																							39
GAA	-	-	81	27	7	1	1	1	1					1																																																																																																																																																																																															120
GAC	-	-	1																																																																																																																																																																																																										1
GAG	-	-	7		1																																																																																																																																																																																																								8
GAT	-	-	28	19	7	7	5		1		1	1																																																																																																																																																																																																	69
GCC	-	-	1																																																																																																																																																																																																										1
GCT	-	-	4																																																																																																																																																																																																										4
GGA	-	-	4																																																																																																																																																																																																										4
GGT	-	-	3																																																																																																																																																																																																										3
GTA	-	-	11	2	1	1		1																																																																																																																																																																																																					16
GTT	-	-	8	4	2				1																		1									1																																																																																																																																																																									17
TAA	-	-	136	43	29	16	8	14	3	6	2	4	2	2	1	4			2	2	3	1		1			1		2		1	1	1						2	1	1					1	1			1	1		1			1					1									1								1					1		1										1						1						1																																																																					1																													304
TAC	-	-	12	4	2	1		1																																																																																																																																																																																																					20
TAG	-	-	9	5	3	3	2		1	1		1																											1																																																																																																																																																																						26
TAT	-	-	150	68	34	21	4	11	9	4	5	4	3	4		4		1	2								2	1		2						1	1	1										1		1							1						1		1		1					1											1																									1			1																																																																			1																											343
TCA	-	-	23	12	7	5	3	3	1				1				1																														1																																																																																																																																																														57
TCC	-	-	3																																																																																																																																																																																																										3
TCT	-	-	51	10	8	2	1	1	1																																																																																																																																																																																																				74
TGA	-	-	19	3	3	3			1																																																																																																																																																																																																				29
TGC	-	-	3	1																																																																																																																																																																																																									4
TGG	-	-	3		1																																																																																																																																																																																																								4
TGT	-	-	8	3	4				1																					1											1																																																																																																																																																																				18
TTA	-	-	204	89	52	22	19	21	8	9	6	3	4	2	2	2	3	1	4	3	3	1	1	1	2	1					2	2	1		1	1	2		1		1								1	1		2			1		1	2								1																	1				1										1																							1													1				1																																																																			1	490
TTC	-	-	99	29	9	3	1	1	2																																																																																																																																																																																																				144
TTG	-	-	39	14	3	2	4	1	2	1					1																		1			1																																																																																																																																																																									69
AAAC	-	175	43	15	5	5	5			1		1		1																																																																																																																																																																																															251
AAAG	-	45	5	7	3	2																																																																																																																																																																																																							62
AAAT	-	767	162	42	26	9	10	2	4	4	2	1	3	1	1	1																																																																																																																																																																																													1035
AACA	-	15	9	3	2	1	1																																																																																																																																																																																																						31
AACC	-	3	1																																																																																																																																																																																																										4
AACT	-	23	6	2		2	1	1					1																																																																																																																																																																																																36
AAGA	-	88	42	5	1	1					1																																																																																																																																																																																																		138
AAGC	-	6	1			1																																																																																																																																																																																																							8
AAGG	-	2	1																																																																																																																																																																																																										3
AAGT	-	15	7	1	2																																																																																																																																																																																																								25
AATA	-	467	85	37	14	10	6	5	6	4	6	8	2		4		1		2	1																																																																																																																																																																																									658
AATC	-	67	18	3				1																																																																																																																																																																																																					89
AATG	-	51	9	4	1		2																																																																																																																																																																																																						67
AATT	-	513	94	26	7	5	1	1																																																																																																																																																																																																					647
ACAA	-	23	8	4	4	4	1												1																																																																																																																																																																																										45
ACAT	-	15	7	3			1	1	1		1		1			1																																																																																																																																																																																													31
ACCA	-	1																																																																																																																																																																																																											1
ACCT	-	3																																																																																																																																																																																																											3
ACGG	-	1																																																																																																																																																																																																											1
ACTA	-	23	6	5		4	1	1	1																																																																																																																																																																																																				41
ACTC	-	4	1																																																																																																																																																																																																										5
ACTG	-	1																																																																																																																																																																																																											1
ACTT	-	22	3	1	1									1																																																																																																																																																																																															28
AGAA	-	25	2		1			2																																																																																																																																																																																																					30
AGAC	-	5	3																																																																																																																																																																																																										8
AGAT	-	50	15	4	4	2	1	1		1	2					1					1				1			1																																																																																																																																																																																	84
AGCA	-	2																																																																																																																																																																																																											2
AGCT	-	4																																																																																																																																																																																																											4
AGGA	-		1																																																																																																																																																																																																										1
AGGG	-	1																																																																																																																																																																																																											1
AGGT	-			1																																																																																																																																																																																																									1
AGTA	-	15	6	2	2				1																																																																																																																																																																																																				26
AGTC	-	5	1	1															1																																																																																																																																																																																										8
AGTG	-	6	2	1																																																																																																																																																																																																									9
AGTT	-	37	10	4	2	2	1		1																																																																																																																																																																																																				57
ATAA	-	273	53	17	12	3	3		1				1	1	2	2		1			2	1	1		1				1																																																																																																																																																																																375
ATAC	-	50	8	5	2	2	3	1	1	1		1			1				2			1																																																																																																																																																																																							78
ATAG	-	35	12	7	4	5	3	2	1	2	2					1	1													1																																																																																																																																																																															76
ATCA	-	40	12		1																																																																																																																																																																																																								53
ATCC	-	1	2																																																																																																																																																																																																										3
ATCG	-	1																																																																																																																																																																																																											1
ATCT	-	49	12	7	4	2	2	1																																																																																																																																																																																																					77
ATGA	-	18	4	2	2				1																																																																																																																																																																																																				27
ATGG	-	3									1																																																																																																																																																																																																		4
ATGT	-	40	5	2	2	3	1	2		2		2																																																																																																																																																																																																	59
ATTA	-	295	49	17	6																																																																																																																																																																																																								367
ATTC	-	67	12	2	1		1																																																																																																																																																																																																						83
ATTG	-	45	8	4	1																																																																																																																																																																																																								58
ATTT	-	856	126	28	7	5	2	2					1			1							1																																																																																																																																																																																						1029
CAAA	-	47	16	6	2		3		1	1	1																																																																																																																																																																																																		77
CAAC	-		1																																																																																																																																																																																																										1
CAAG	-	9																																																																																																																																																																																																											9
CAAT	-	24	7	3																																																																																																																																																																																																									34
CACT	-	4																																																																																																																																																																																																											4
CAGA	-	1	1																																																																																																																																																																																																										2
CAGT	-	1																																																																																																																																																																																																											1
CATA	-	25	1	1		2			1	2																																																																																																																																																																																																			32
CATC	-	8	2		1																																																																																																																																																																																																								11
CATT	-	17	1	3	2																																																																																																																																																																																																								23
CCAC	-	1																																																																																																																																																																																																											1
CCAT	-				1																																																																																																																																																																																																								1
CCTA	-	4																																																																																																																																																																																																											4
CCTT	-	2																																																																																																																																																																																																											2
CTAA	-	32	10	3	3			1	1																																																																																																																																																																																																				50
CTAC	-	6		1																																																																																																																																																																																																									7
CTAG	-	4																																																																																																																																																																																																											4
CTAT	-	19	11	5	2	2	1		1	1																																																																																																																																																																																																			42
CTCA	-	2	1																																																																																																																																																																																																										3
CTGA	-	5		1	1																																																																																																																																																																																																								7
CTGT	-			1																																																																																																																																																																																																									1
CTTA	-	11	6	4			1	1																																																																																																																																																																																																					23
CTTC	-	3	1																																																																																																																																																																																																										4
CTTG	-	5																																																																																																																																																																																																											5
CTTT	-	16	12	3	3	1																																																																																																																																																																																																							35
GAAA	-	26	1	2	1	1																																																																																																																																																																																																							31
GAAC	-	2																																																																																																																																																																																																											2
GAAG	-	3																																																																																																																																																																																																											3
GAAT	-	18		3																																																																																																																																																																																																									21
GACA	-	1																																																																																																																																																																																																											1
GACT	-	2		1																																																																																																																																																																																																									3
GAGC	-	1																																																																																																																																																																																																											1
GAGG	-	1																																																																																																																																																																																																											1
GAGT	-	5																																																																																																																																																																																																											5
GATA	-	40	3	3		2	3	2	1	1				1				1			1																																																																																																																																																																																								58
GATC	-	3																																																																																																																																																																																																											3
GATG	-	7	1	1	1																																																																																																																																																																																																								10
GATT	-	34	6	1	1																																																																																																																																																																																																								42
GCAA	-	3																																																																																																																																																																																																											3
GCTA	-	1																																																																																																																																																																																																											1
GCTT	-	4																																																																																																																																																																																																											4
GGAA	-	1																																																																																																																																																																																																											1
GGAG	-	1																																																																																																																																																																																																											1
GGAT	-	2	1																																																																																																																																																																																																										3
GGCT	-	1																																																																																																																																																																																																											1
GGGT	-	1																																																																																																																																																																																																											1
GGTA	-	2	3																																																																																																																																																																																																										5
GGTT	-	2	1																																																																																																																																																																																																										3
GTAA	-	50	14	3	2	1	1				2	1																																																																																																																																																																																																	74
GTAG	-	6	2	1																																																																																																																																																																																																									9
GTAT	-	16	6		1	2																																																																																																																																																																																																							25
GTCA	-	4	1																																																																																																																																																																																																										5
GTCT	-			1								1																																																																																																																																																																																																	2
GTGA	-	4																																																																																																																																																																																																											4
GTGG	-	1																																																																																																																																																																																																											1
GTTA	-	40	12	6	4	3	1	1																																																																																																																																																																																																					67
GTTC	-	1																																																																																																																																																																																																											1
GTTG	-	2	1	1																																																																																																																																																																																																									4
GTTT	-	21	4	3	1	2																																																																																																																																																																																																							31
TAAA	-	496	87	17	8	4	4		5		4	1	1	2	1	1		1		2																																																																																																																																																																																									634
TAAC	-	87	28	10	5		1	1	1	1	1		1				1				1									1																																																																																																																																																																															139
TAAG	-	31	12	7	2			1	1																																																																																																																																																																																																				54
TAAT	-	222	49	13	5	1																																																																																																																																																																																																							290
TACA	-	11	5			2																																																																																																																																																																																																							18
TACC	-	4	1																																																																																																																																																																																																										5
TACT	-	12	5																																																																																																																																																																																																										17
TAGA	-	26	7	6	1	1	2				1																																																																																																																																																																																																		44
TAGC	-	4																																																																																																																																																																																																											4
TAGG	-	7	1																																																																																																																																																																																																										8
TAGT	-	20	12	1	3								1																																																																																																																																																																																																37
TATC	-	93	23	16	1	5	6	1	2			1	1	1																																																																																																																																																																																															150
TATG	-	20	3	2	2	3			1	1		1																																																																																																																																																																																																	33
TATT	-	362	87	30	18	4	3	4	4	3	1	1		3	1	2		1																																																																																																																																																																																											524
TCAA	-	25	6	3				1																																																																																																																																																																																																					35
TCAC	-	7	1	1																																																																																																																																																																																																									9
TCAG	-	5	2	1																																																																																																																																																																																																									8
TCAT	-	15	3	4	5	1																																																																																																																																																																																																							28
TCCA	-	1	1	1																																																																																																																																																																																																									3
TCCT	-	1	1																																																																																																																																																																																																										2
TCTA	-	16	11	3	4	1	3	1	2		1				1																																																																																																																																																																																														43
TCTG	-	2	1																																																					1																																																																																																																																																					4
TCTT	-	15	2	4																																																																																																																																																																																																									21
TGAA	-	38	5																																																																																																																																																																																																										43
TGAC	-	6	2	1																																																																																																																																																																																																									9
TGAG	-	4	3	1																																																																																																																																																																																																									8
TGAT	-	36	4	1	1												1																																																																																																																																																																																												43
TGCT	-	4																																																																																																																																																																																																											4
TGGA	-	3																																																																																																																																																																																																											3
TGGC	-	1																																																																																																																																																																																																											1
TGGT	-	2																																																																																																																																																																																																											2
TGTA	-	17		2	2	2	1	2			1													1																																																																																																																																																																																					28
TGTC	-	2	1			1												1																																																																																																																																																																																											5
TGTT	-	27	10	3	1	1	1																																																																																																																																																																																																						43
TTAA	-	442	72	16	4	1		2																																																																																																																																																																																																					537
TTAC	-	52	7	1	1	1								1																																																																																																																																																																																															63
TTAG	-	96	28	10	3	1		1		2			1																																																																																																																																																																																																142
TTAT	-	440	94	24	10	10	4	4	1	2	3	2	1	2		1	1		1					1																																																																																																																																																																																					601
TTCA	-	37	11	2	1			1																																																																																																																																																																																																					52
TTCC	-	2	1																																																																																																																																																																																																										3
TTCT	-	14	6	1	1		1																																																																																																																																																																																																						23
TTGA	-	40	8	6	1																																																																																																																																																																																																								55
TTGC	-	14																																																																																																																																																																																																											14
TTGG	-	1		1																																																																																																																																																																																																									2
TTGT	-	28	12	3	1			2		1																																																																																																																																																																																																			47
TTTA	-	501	113	27	13	9	4	5	1	1	3	3	3	2	4					1		2																																																																																																																																																																																							692
TTTC	-	54	11	7	1		1		1																																																																																																																																																																																																				75
TTTG	-	387	123	21	14	6		1		3		3																																																																																																																																																																																																	558
AAAAC	12																																																																																																																																																																																																												12
AAAAG	31	2																																																																																																																																																																																																											33
AAAAT	245	11	1																																																																																																																																																																																																										257
AAACA	7																																																																																																																																																																																																												7
AAACT		1																																																																																																																																																																																																											1
AAAGA	6																																																																																																																																																																																																												6
AAAGC	1																																																																																																																																																																																																												1
AAAGT	1																																																																																																																																																																																																												1
AAATA	171	13	1	1																																																																																																																																																																																																									186
AAATC	13	3																																																																																																																																																																																																											16
AAATG	3																																																																																																																																																																																																												3
AAATT	168	12	1																																																																																																																																																																																																										181
AACAA	4																																																																																																																																																																																																												4
AACAG	1																																																																																																																																																																																																												1
AACCA	1																																																																																																																																																																																																												1
AACTC	1																																																																																																																																																																																																												1
AACTT	1																																																																																																																																																																																																												1
AAGAA	9																																																																																																																																																																																																												9
AAGAG	1																																																																																																																																																																																																												1
AAGAT	2																																																																																																																																																																																																												2
AAGCT	1																																																																																																																																																																																																												1
AAGTA	3																																																																																																																																																																																																												3
AAGTC	1																																																																																																																																																																																																												1
AAGTT	3																																																																																																																																																																																																												3
AATAA	112	4																																																																																																																																																																																																											116
AATAC	1																																																																																																																																																																																																												1
AATAG	13	1	1																																																																																																																																																																																																										15
AATAT	10	1																																																																																																																																																																																																											11
AATCA	10	1																																																																																																																																																																																																											11
AATCC	2	1																																																																																																																																																																																																											3
AATCG	2	1																																																																																																																																																																																																											3
AATCT		1																																																																																																																																																																																																											1
AATGA	2																																																																																																																																																																																																												2
AATGT	1																																																																																																																																																																																																												1
AATTA	76	5			1																																																																																																																																																																																																								82
AATTC	10																																																																																																																																																																																																												10
AATTG	2																																																																																																																																																																																																												2
AATTT	150	10	1																																																																																																																																																																																																										161
ACAAA	5																																																																																																																																																																																																												5
ACAAT	2	1																																																																																																																																																																																																											3
ACAGT		1																																																																																																																																																																																																											1
ACATC	1																																																																																																																																																																																																												1
ACTCA	1																																																																																																																																																																																																												1
ACTGC	1																																																																																																																																																																																																												1
ACTTA	1	1																																																																																																																																																																																																											2
AGAAA	7																																																																																																																																																																																																												7
AGAAG	5																																																																																																																																																																																																												5
AGAAT	8																																																																																																																																																																																																												8
AGATA	3																																																																																																																																																																																																												3
AGATT	2																																																																																																																																																																																																												2
AGCAT	1																																																																																																																																																																																																												1
AGCTC	1																																																																																																																																																																																																												1
AGCTG	2																																																																																																																																																																																																												2
AGGGT	1																																																																																																																																																																																																												1
AGTTG	1																																																																																																																																																																																																												1
AGTTT	2																																																																																																																																																																																																												2
ATAAA	141	4																																																																																																																																																																																																											145
ATAAC	3																																																																																																																																																																																																												3
ATAAG	2																																																																																																																																																																																																												2
ATAAT	18	1																																																																																																																																																																																																											19
ATACA	5																																																																																																																																																																																																												5
ATAGA	43	9																																																																																																																																																																																																											52
ATATA	5																																																																																																																																																																																																												5
ATATC	1																																																																																																																																																																																																												1
ATATG	1																																																																																																																																																																																																												1
ATATT	4			1	1																																																																																																																																																																																																								6
ATCAA	3																																																																																																																																																																																																												3
ATCAG	1																																																																																																																																																																																																												1
ATCAT	2																																																																																																																																																																																																												2
ATCCA	1																																																																																																																																																																																																												1
ATCTA	1	1																																																																																																																																																																																																											2
ATCTT	1																																																																																																																																																																																																												1
ATGAA	10																																																																																																																																																																																																												10
ATGAT	3																																																																																																																																																																																																												3
ATGCC	1																																																																																																																																																																																																												1
ATGGA	1																																																																																																																																																																																																												1
ATGTA	1																																																																																																																																																																																																												1
ATGTT		1																																																																																																																																																																																																											1
ATTAA	68	4	1																																																																																																																																																																																																										73
ATTAG	6	1																																																																																																																																																																																																											7
ATTAT	8	1																																																																																																																																																																																																											9
ATTCA	4																																																																																																																																																																																																												4
ATTCC	2																																																																																																																																																																																																												2
ATTCG	1																																																																																																																																																																																																												1
ATTCT	1																																																																																																																																																																																																												1
ATTGA	6																																																																																																																																																																																																												6
ATTGC	1																																																																																																																																																																																																												1
ATTGG	1																																																																																																																																																																																																												1
ATTTA	86	1																																																																																																																																																																																																											87
ATTTC	11																																																																																																																																																																																																												11
ATTTG	10																																																																																																																																																																																																												10
ATTTT	271	17	1																																																																																																																																																																																																										289
CAAAA	12																																																																																																																																																																																																												12
CAAAC	1																																																																																																																																																																																																												1
CAAAG	1																																																																																																																																																																																																												1
CAAAT	10																																																																																																																																																																																																												10
CAATA	2																																																																																																																																																																																																												2
CAATC	1																																																																																																																																																																																																												1
CAATT	2																																																																																																																																																																																																												2
CAGAC	1																																																																																																																																																																																																												1
CAGCT	13																																																																																																																																																																																																												13
CATTA	1																																																																																																																																																																																																												1
CATTT	18																																																																																																																																																																																																												18
CCAAA	2																																																																																																																																																																																																												2
CCCAA	1																																																																																																																																																																																																												1
CCCCA	1																																																																																																																																																																																																												1
CGAAA	1																																																																																																																																																																																																												1
CGAGC	1																																																																																																																																																																																																												1
CTAAA	3																																																																																																																																																																																																												3
CTAAG	1																																																																																																																																																																																																												1
CTAAT	2																																																																																																																																																																																																												2
CTATT	2																																																																																																																																																																																																												2
CTCAA	2																																																																																																																																																																																																												2
CTCAT	1																																																																																																																																																																																																												1
CTCTT	1																																																																																																																																																																																																												1
CTTAA	1																																																																																																																																																																																																												1
CTTAC	1																																																																																																																																																																																																												1
CTTGA	1																																																																																																																																																																																																												1
CTTGC	1																																																																																																																																																																																																												1
CTTGT	1																																																																																																																																																																																																												1
CTTTA	3		1																																																																																																																																																																																																										4
CTTTC	1																																																																																																																																																																																																												1
CTTTT	10																																																																																																																																																																																																												10
GAAAA	7																																																																																																																																																																																																												7
GAAAT	1	2																																																																																																																																																																																																											3
GAATA	3																																																																																																																																																																																																												3
GAATT	1																																																																																																																																																																																																												1
GAGCT	11																																																																																																																																																																																																												11
GAGTT	1																																																																																																																																																																																																												1
GATAT	1																																																																																																																																																																																																												1
GATGA	1																																																																																																																																																																																																												1
GATTT	6																																																																																																																																																																																																												6
GCAAA	1																																																																																																																																																																																																												1
GCTTA			1																																																																																																																																																																																																										1
GGATT	1																																																																																																																																																																																																												1
GGGTT	4																																																																																																																																																																																																												4
GTAAA	1																																																																																																																																																																																																												1
GTATA	1																																																																																																																																																																																																												1
GTATT	1																																																																																																																																																																																																												1
GTTAA	2																																																																																																																																																																																																												2
GTTAT	1																																																																																																																																																																																																												1
GTTTA	2	1																																																																																																																																																																																																											3
GTTTT	1																																																																																																																																																																																																												1
TAAAA	238	9																																																																																																																																																																																																											247
TAAAG	4																																																																																																																																																																																																												4
TAAAT	120	3	1																																																																																																																																																																																																										124
TAACT	2																																																																																																																																																																																																												2
TAAGG	1																																																																																																																																																																																																												1
TAAGT	1																																																																																																																																																																																																												1
TAATA	4	1		1				1																																																																																																																																																																																																					7
TAATC	5																																																																																																																																																																																																												5
TAATG	1																																																																																																																																																																																																												1
TAATT	87	3		2																																																																																																																																																																																																									92
TACAA	1																																																																																																																																																																																																												1
TACTT	3																																																																																																																																																																																																												3
TAGAA	3	1																																																																																																																																																																																																											4
TAGAG	2																																																																																																																																																																																																												2
TAGTA	1																																																																																																																																																																																																												1
TAGTT	2																																																																																																																																																																																																												2
TATAA	12	1																																																																																																																																																																																																											13
TATAT	5	1																																																																																																																																																																																																											6
TATCT	1																																																																																																																																																																																																												1
TATGA	1																																																																																																																																																																																																												1
TATTA	16																																																																																																																																																																																																												16
TATTC	3																																																																																																																																																																																																												3
TATTG	5																																																																																																																																																																																																												5
TATTT	129	8	1																																																																																																																																																																																																										138
TCAAA	5	1																																																																																																																																																																																																											6
TCAAT	2																																																																																																																																																																																																												2
TCAGC	1																																																																																																																																																																																																												1
TCATC	1																																																																																																																																																																																																												1
TCATG	2																																																																																																																																																																																																												2
TCATT	3																																																																																																																																																																																																												3
TCCTA	1																																																																																																																																																																																																												1
TCTAA	4																																																																																																																																																																																																												4
TCTAC	2																																																																																																																																																																																																												2
TCTAG	1																																																																																																																																																																																																												1
TCTAT	2																																																																																																																																																																																																												2
TCTTA	2	1																																																																																																																																																																																																											3
TCTTC	5																																																																																																																																																																																																												5
TCTTG	1																																																																																																																																																																																																												1
TCTTT	12																																																																																																																																																																																																												12
TGAAA	7																																																																																																																																																																																																												7
TGAAT	2																																																																																																																																																																																																												2
TGAGT	1																																																																																																																																																																																																												1
TGATA	1																																																																																																																																																																																																												1
TGATT	9	1																																																																																																																																																																																																											10
TGCAC	1																																																																																																																																																																																																												1
TGCTC	1																																																																																																																																																																																																												1
TGCTT	2																																																																																																																																																																																																												2
TGGTT	4																																																																																																																																																																																																												4
TGTAA		1																																																																																																																																																																																																											1
TGTAT	1	1																																																																																																																																																																																																											2
TGTCT	2																																																																																																																																																																																																												2
TGTGA	1																																																																																																																																																																																																												1
TGTTT	11	5	2																																																																																																																																																																																																										18
TTAAA	149	4																																																																																																																																																																																																											153
TTAAC	2																																																																																																																																																																																																												2
TTAAG	1																																																																																																																																																																																																												1
TTAAT	67	4																																																																																																																																																																																																											71
TTACT	2																																																																																																																																																																																																												2
TTAGA	6	2																																																																																																																																																																																																											8
TTAGC	1																																																																																																																																																																																																												1
TTAGT	1																																																																																																																																																																																																												1
TTATA	3																																																																																																																																																																																																												3
TTATC	3		1																																																																																																																																																																																																										4
TTATG	2																																																																																																																																																																																																												2
TTATT	124	4	1																																																																																																																																																																																																										129
TTCAT	2																																																																																																																																																																																																												2
TTCCT	1																																																																																																																																																																																																												1
TTCGA	1	2																																																																																																																																																																																																											3
TTCTA	70	14	1																																																																																																																																																																																																										85
TTCTC	1																																																																																																																																																																																																												1
TTCTT	8																																																																																																																																																																																																												8
TTGAA	3																																																																																																																																																																																																												3
TTGAT	4																																																																																																																																																																																																												4
TTGCT	1	1																																																																																																																																																																																																											2
TTGGA	1																																																																																																																																																																																																												1
TTGGT	1																																																																																																																																																																																																												1
TTGTA	4																																																																																																																																																																																																												4
TTGTT	4	1																																																																																																																																																																																																											5
TTTAA	156	8																																																																																																																																																																																																											164
TTTAC	2	1																																																																																																																																																																																																											3
TTTAG	4																																																																																																																																																																																																												4
TTTAT	185	5																																																																																																																																																																																																											190
TTTCA	1																																																																																																																																																																																																												1
TTTCG	1																																																																																																																																																																																																												1
TTTCT	11		1																																																																																																																																																																																																										12
TTTGA	11																																																																																																																																																																																																												11
TTTGC	1																																																																																																																																																																																																												1
TTTGG	1																																																																																																																																																																																																												1
TTTGT	2																																																																																																																																																																																																												2
TTTTA	277	9																																																																																																																																																																																																											286
TTTTC	20																																																																																																																																																																																																												20
TTTTG	14	3																																																																																																																																																																																																											17
AAAAAC	2																																																																																																																																																																																																												2
AAAAAG	1																																																																																																																																																																																																												1
AAAAAT	20																																																																																																																																																																																																												20
AAAAGA	3																																																																																																																																																																																																												3
AAAATA	13	2																																																																																																																																																																																																											15
AAAATC	6																																																																																																																																																																																																												6
AAAATG	2	1																																																																																																																																																																																																											3
AAAATT	20																																																																																																																																																																																																												20
AAACAA	1																																																																																																																																																																																																												1
AAACAG	2																																																																																																																																																																																																												2
AAAGAA	2																																																																																																																																																																																																												2
AAAGAG	1																																																																																																																																																																																																												1
AAATAA	12																																																																																																																																																																																																												12
AAATAG	2																																																																																																																																																																																																												2
AAATAT	5																																																																																																																																																																																																												5
AAATGA	1																																																																																																																																																																																																												1
AAATTA	8																																																																																																																																																																																																												8
AAATTC	3																																																																																																																																																																																																												3
AAATTT	8																																																																																																																																																																																																												8
AACAAA	1																																																																																																																																																																																																												1
AACAAT	2																																																																																																																																																																																																												2
AACCCC	3		2														1	1							1														1									1										1						1								1																																																																																																																																					13
AAGAAA	8																																																																																																																																																																																																												8
AAGATA	1																																																																																																																																																																																																												1
AAGATG	2																																																																																																																																																																																																												2
AATAAA	20																																																																																																																																																																																																												20
AATAAC	3	1																																																																																																																																																																																																											4
AATACA	1																																																																																																																																																																																																												1
AATATA	3																																																																																																																																																																																																												3
AATATT	3																																																																																																																																																																																																												3
AATCAA	5																																																																																																																																																																																																												5
AATTAA	5																																																																																																																																																																																																												5
AATTTA	8																																																																																																																																																																																																												8
AATTTT	11																																																																																																																																																																																																												11
ACAAAA	1																																																																																																																																																																																																												1
ACAAGG	1																																																																																																																																																																																																												1
ACAATA	1																																																																																																																																																																																																												1
ACAATC	1																																																																																																																																																																																																												1
ACAATT	1																																																																																																																																																																																																												1
ACCCCA	2			2	1					1				1																																			1																																				1						1																																																																																																																		10
ACGACC	1																																																																																																																																																																																																												1
ACTTCT	1																																																																																																																																																																																																												1
AGAAAA	8																																																																																																																																																																																																												8
AGATTA	1																																																																																																																																																																																																												1
AGCAAA	1																																																																																																																																																																																																												1
AGCATA	2																																																																																																																																																																																																												2
AGGTTT	1																																																																																																																																																																																																												1
ATAAAA	11																																																																																																																																																																																																												11
ATAAAC	1																																																																																																																																																																																																												1
ATAAAT	4																																																																																																																																																																																																												4
ATAATC	2																																																																																																																																																																																																												2
ATAATG	1																																																																																																																																																																																																												1
ATAATT	3																																																																																																																																																																																																												3
ATAGAA	1																																																																																																																																																																																																												1
ATATAA	2																																																																																																																																																																																																												2
ATATAG	1																																																																																																																																																																																																												1
ATATTA	2																																																																																																																																																																																																												2
ATATTC	1																																																																																																																																																																																																												1
ATATTT	8																																																																																																																																																																																																												8
ATCAAA	1																																																																																																																																																																																																												1
ATCACT	1																																																																																																																																																																																																												1
ATCTTC	4																																																																																																																																																																																																												4
ATGAAG	2																																																																																																																																																																																																												2
ATGATA	1																																																																																																																																																																																																												1
ATGATT	1																																																																																																																																																																																																												1
ATGCTA	1																																																																																																																																																																																																												1
ATTAAA	3																																																																																																																																																																																																												3
ATTACC	1																																																																																																																																																																																																												1
ATTATG	1																																																																																																																																																																																																												1
ATTCAA	1																																																																																																																																																																																																												1
ATTCTT	2																																																																																																																																																																																																												2
ATTTAA	5																																																																																																																																																																																																												5
ATTTAG	1																																																																																																																																																																																																												1
ATTTAT	6																																																																																																																																																																																																												6
ATTTGA	1	1																																																																																																																																																																																																											2
ATTTGG	1																																																																																																																																																																																																												1
ATTTGT	1																																																																																																																																																																																																												1
ATTTTA	10																																																																																																																																																																																																												10
ATTTTC	1																																																																																																																																																																																																												1
ATTTTG	1																																																																																																																																																																																																												1
ATTTTT	30																																																																																																																																																																																																												30
CAAAAA	2																																																																																																																																																																																																												2
CAAAAT	2																																																																																																																																																																																																												2
CAACCC	2	1																	1						1								1												1						1																					1				1		1		1					1																																																																																																																								13
CAATAA	1	1																																																																																																																																																																																																											2
CAATAG	1																																																																																																																																																																																																												1
CAATAT	1																																																																																																																																																																																																												1
CACGAA	1																																																																																																																																																																																																												1
CATAAA	1																																																																																																																																																																																																												1
CATAAT	1																																																																																																																																																																																																												1
CATACA		1																																																																																																																																																																																																											1
CATCAC	1																																																																																																																																																																																																												1
CATCTT	2																																																																																																																																																																																																												2
CATTAT	2																																																																																																																																																																																																												2
CCAACC			2		2	1	1							1										1																		1									1					1				1	1	1			1			1	1				2	1		3		1																							1																																																																																																								25
CCATAA	2																																																																																																																																																																																																												2
CCCAAA	1																																																																																																																																																																																																												1
CCCAAC	3	6	4	1		1		1				1	1	1					1										1		1	1				1					1			1	1		2						1	1		1				1									1	1	3	1	1		1	1	1	2		2	1								1																																																																																																																				49
CCCACC	1																																																																																																																																																																																																												1
CCCCAA	2	1	2	3	2	2		4	2		1	1	1		1												1			1		1									1						1							1																1		1	1	1	1	1	1		1																			1									1																																																																																																		38
CTAAAC	2																																																																																																																																																																																																												2
CTATCT	1																																																																																																																																																																																																												1
CTATTA	1																																																																																																																																																																																																												1
CTCCTG	1																																																																																																																																																																																																												1
CTGCAC	1																																																																																																																																																																																																												1
CTTAAA	1																																																																																																																																																																																																												1
CTTTAT	1																																																																																																																																																																																																												1
CTTTTA	2																																																																																																																																																																																																												2
CTTTTT	1																																																																																																																																																																																																												1
GAAAAA	3																																																																																																																																																																																																												3
GAAAAT	4																																																																																																																																																																																																												4
GAAATA	1																																																																																																																																																																																																												1
GAAATT	1																																																																																																																																																																																																												1
GAAGAC	1																																																																																																																																																																																																												1
GAAGAT	4																																																																																																																																																																																																												4
GAAGTT	1																																																																																																																																																																																																												1
GAATAA	1																																																																																																																																																																																																												1
GAATTA	1																																																																																																																																																																																																												1
GACGAT	1																																																																																																																																																																																																												1
GAGAAA	1																																																																																																																																																																																																												1
GAGCTT	1																																																																																																																																																																																																												1
GATATA	1																																																																																																																																																																																																												1
GATGAA	3																																																																																																																																																																																																												3
GCAGTG	1																																																																																																																																																																																																												1
GCATAT	1																																																																																																																																																																																																												1
GCTGCA	1																																																																																																																																																																																																												1
GGAATA	1																																																																																																																																																																																																												1
GGGGTG	1																																																																																																																																																																																																												1
GGGGTT	14	7	7	7	6	5	1	3	4	2	1	1	1	1		2	1	2	1			1				2			1			3				1			1			4			1		1							1	1	1	2		1	1			1		1		2	1							1	1	1		2		1				1	1					1					1																	1																																																																																												104
GGGTTG	4	6	2	2	3	2	2	1	1	1	3			1	1		1						1			1																										1								1			1																																																																																																																																														35
GGGTTT																											1																																																																																																																																																																																		1
GGTATG	1																																																																																																																																																																																																												1
GGTTGG	2	2	1	2						2						2																1																																																																																																																																																																													12
GGTTTT	1																																																																																																																																																																																																												1
GTGAAA		1																																																																																																																																																																																																											1
GTTAAT	1																																																																																																																																																																																																												1
GTTATC	1																																																																																																																																																																																																												1
GTTATT	2	1																																																																																																																																																																																																											3
GTTGGG	1		1	1		1						1												1												1													1													1			1			1								1		1		1																																1																																																																																													15
GTTTTT	1																																																																																																																																																																																																												1
TAAAAA	15																																																																																																																																																																																																												15
TAAAAC	1																																																																																																																																																																																																												1
TAAAAT	11																																																																																																																																																																																																												11
TAAACT	1																																																																																																																																																																																																												1
TAAATA	1	1																																																																																																																																																																																																											2
TAAATG	1																																																																																																																																																																																																												1
TAAATT	4	1																																																																																																																																																																																																											5
TAACAA	1																																																																																																																																																																																																												1
TAATAG	2																																																																																																																																																																																																												2
TAATCT	1																																																																																																																																																																																																												1
TAATGC	1																																																																																																																																																																																																												1
TAATTA	5																																																																																																																																																																																																												5
TAATTT	9		1																																																																																																																																																																																																										10
TACTTC	1																																																																																																																																																																																																												1
TACTTT	1																																																																																																																																																																																																												1
TAGAAA	1																																																																																																																																																																																																												1
TAGAAT	1																																																																																																																																																																																																												1
TAGAGA	1																																																																																																																																																																																																												1
TAGTAA	1																																																																																																																																																																																																												1
TAGTTT	1																																																																																																																																																																																																												1
TATAAA	3	1																																																																																																																																																																																																											4
TATAAT	2																																																																																																																																																																																																												2
TATATT	4																																																																																																																																																																																																												4
TATGAG	1																																																																																																																																																																																																												1
TATTAA	4																																																																																																																																																																																																												4
TATTAC	3	1		1																																																																																																																																																																																																									5
TATTGC	1																																																																																																																																																																																																												1
TATTGT	2																																																																																																																																																																																																												2
TATTTA	11																																																																																																																																																																																																												11
TATTTG	1																																																																																																																																																																																																												1
TATTTT	14	1																																																																																																																																																																																																											15
TCAAAA	2																																																																																																																																																																																																												2
TCAATT	1																																																																																																																																																																																																												1
TCACTA	1																																																																																																																																																																																																												1
TCATCT	4																																																																																																																																																																																																												4
TCATTC	1																																																																																																																																																																																																												1
TCATTT	1																																																																																																																																																																																																												1
TCTAAA	2																																																																																																																																																																																																												2
TCTCTG	1																																																																																																																																																																																																												1
TCTGAA	1																																																																																																																																																																																																												1
TCTTCA	6																																																																																																																																																																																																												6
TCTTTA		1																																																																																																																																																																																																											1
TCTTTT	1																																																																																																																																																																																																												1
TGAAAG	1																																																																																																																																																																																																												1
TGAAGA	1																																																																																																																																																																																																												1
TGATCT	1																																																																																																																																																																																																												1
TGATTA	1																																																																																																																																																																																																												1
TGCTAC	1																																																																																																																																																																																																												1
TGCTCG		1																																																																																																																																																																																																											1
TGGAAC	1																																																																																																																																																																																																												1
TGGCCA	1																																																																																																																																																																																																												1
TGGGGT	1	2	4	1	1	2		1	1	1		1	1	3																		1					1							3			1			2			1													1						1		1																	1										1																																																																																																								33
TGTGTT	1																																																																																																																																																																																																												1
TGTTAT	2																																																																																																																																																																																																												2
TTAAAA	19																																																																																																																																																																																																												19
TTAAAT	10																																																																																																																																																																																																												10
TTAATA	1																																																																																																																																																																																																												1
TTAATG		2																																																																																																																																																																																																											2
TTAATT	7																																																																																																																																																																																																												7
TTAGAA	1																																																																																																																																																																																																												1
TTATAT	2																																																																																																																																																																																																												2
TTATCT		1																																																																																																																																																																																																											1
TTATTG	6																																																																																																																																																																																																												6
TTATTT	16																																																																																																																																																																																																												16
TTCAAA	1																																																																																																																																																																																																												1
TTCAAT	1																																																																																																																																																																																																												1
TTCATT	2																																																																																																																																																																																																												2
TTCTAA	1																																																																																																																																																																																																												1
TTCTTA	1																																																																																																																																																																																																												1
TTCTTT	5																																																																																																																																																																																																												5
TTGCTA	1																																																																																																																																																																																																												1
TTGGGG	5	1	2			1		1														1	1		1								2				1						3			1		1	1	1	1	3	1					1					1	2	1		2	1	2		2		2						1	1															1													1																																																																																																	46
TTGGGT							1																																																																																																																																																																																																						1
TTGTTA	6	1																																																																																																																																																																																																											7
TTGTTT	1	1																																																																																																																																																																																																											2
TTTAAA	17																																																																																																																																																																																																												17
TTTAAT	6																																																																																																																																																																																																												6
TTTACT	1																																																																																																																																																																																																												1
TTTAGA	1																																																																																																																																																																																																												1
TTTATA	6	1																																																																																																																																																																																																											7
TTTATG	1																																																																																																																																																																																																												1
TTTATT	10																																																																																																																																																																																																												10
TTTCTT	3																																																																																																																																																																																																												3
TTTGAT	1																																																																																																																																																																																																												1
TTTGTG	1																																																																																																																																																																																																												1
TTTTAA	12	2	1																																																																																																																																																																																																										15
TTTTAC	4																																																																																																																																																																																																												4
TTTTAG	2																																																																																																																																																																																																												2
TTTTAT	6	1																																																																																																																																																																																																											7
TTTTCA	1																																																																																																																																																																																																												1
TTTTCT	5																																																																																																																																																																																																												5
TTTTGA	4																																																																																																																																																																																																												4
TTTTGT	1																																																																																																																																																																																																												1
TTTTTA	21																																																																																																																																																																																																												21
TTTTTC	13																																																																																																																																																																																																												13
TTTTTG	5																																																																																																																																																																																																												5

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	3	3	7								1			1																																																																																																																																																																													18
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	10	4	2																	1																																																																																																																																																																								17
AC/GT	-	-	-	209	32	18	11	4	3	5									1																																													1																													1																																																																																																																285
AG/CT	-	-	-	105	44	21	9	9	2	1	2	1		1		1														1														1																		1																						1																										1																																																																																															201
AT/AT	-	-	-	576	414	279	203	106	41	34	27	19	6	8	3	6	2	1	1	2																																																																																																																																																																																									1728
AAC/GTT	-	-	111	41	17	6	5	2	5	1			1		1							1					1	1		1			1			2				1	3										1																																																																																																																																																										202
AAG/CTT	-	-	327	98	41	11	8	3	7	1				1											1																																																																																																																																																																																				498
AAT/ATT	-	-	995	422	231	113	81	70	38	27	20	20	12	13	6	11	6	9	12	8	8	4	1	4	5	1	6	1	3	3	3	5	3	2	2	2	3	2	4	3	3			2		1	2	2	1	3	1	2	2	1	1	3	5	2		1	2		1		1	4	1	2	1	1		1				1	1	1					4		1	2	1						1	1	1		1				1						1	1			1									1								1		1			1				1																																							1		1										1																1	2233
ACC/GGT	-	-	11	2	1																																																																																																																																																																																																								14
ACG/CGT	-	-	1																																																																																																																																																																																																										1
ACT/AGT	-	-	46	24	14	10	6	2	2	1		1																											1																																																																																																																																																																						107
AGC/CTG	-	-	10	2	1																																																																																																																																																																																																								13
AGG/CCT	-	-	25	1	3																																																																																																																																																																																																								29
ATC/ATG	-	-	143	61	29	18	12	5	5	3	2	1	1				1						1				1																				1																																																																																																																																																														284
CCG/CGG	-	-	1																																																																																																																																																																																																										1
AAAC/GTTT	-	723	225	58	30	19	11	3	1	6	1	4		1					1																																																																																																																																																																																										1083
AAAG/CTTT	-	283	81	29	11	5	2	2	1		1																																																																																																																																																																																																		415
AAAT/ATTT	-	4162	807	222	108	54	36	22	22	14	19	16	12	11	13	8	2	3	3	4	2	3	2	1	1				1																																																																																																																																																																																5548
AACC/GGTT	-	11	4	2																																																																																																																																																																																																									17
AACG/CGTT	-	3																																																																																																																																																																																																											3
AACT/AGTT	-	358	112	41	20	12	5	6	4	3	1		4				1				1									1																																																																																																																																																																															569
AAGC/CTTG	-	47	1			1																																																																																																																																																																																																							49
AAGG/CCTT	-	14	5																																																																																																																																																																																																										19
AAGT/ACTT	-	208	60	19	10	2	2	2	2		2	1		2																																																																																																																																																																																															310
AATC/ATTG	-	311	69	21	5			2									1																																																																																																																																																																																												409
AATG/ATTC	-	261	45	20	12	1	3	1	1																																																																																																																																																																																																				344
AATT/AATT	-	1472	264	72	22	7	1	3																																																																																																																																																																																																					1841
ACAG/CTGT	-	11	6	2		1						1						1																																						1																																																																																																																																																					23
ACAT/ATGT	-	194	35	15	9	16	6	6	4	6	2	4	1		1	1			2			1		1																																																																																																																																																																																					304
ACCC/GGGT	-	3																																																																																																																																																																																																											3
ACCT/AGGT	-	32	7	3																																																																																																																																																																																																									42
ACGG/CCGT	-	1																																																																																																																																																																																																											1
ACTC/AGTG	-	36	8	3																																																																																																																																																																																																									47
ACTG/AGTC	-	29	6	5	1														1																																																																																																																																																																																										42
AGAT/ATCT	-	328	94	51	20	20	21	8	7	5	6	1	1	2	1	2	1	1			2				1			1		1																																																																																																																																																																															574
AGCC/CTGG	-	2																																																																																																																																																																																																											2
AGCG/CGCT	-	1																																																																																																																																																																																																											1
AGCT/AGCT	-	13																																																																																																																																																																																																											13
AGGG/CCCT	-	3																																																																																																																																																																																																											3
ATCC/ATGG	-	25	7	2	3						1																																																																																																																																																																																																		38
ATCG/ATCG	-	4																																																																																																																																																																																																											4
AAAAC/GTTTT	72	9	2																																																																																																																																																																																																										83
AAAAG/CTTTT	121	2	1																																																																																																																																																																																																										124
AAAAT/ATTTT	1893	84	5	1																																																																																																																																																																																																									1983
AAACC/GGTTT	10																																																																																																																																																																																																												10
AAACG/CGTTT	2																																																																																																																																																																																																												2
AAACT/AGTTT	14	2																																																																																																																																																																																																											16
AAAGC/CTTTG	7	1																																																																																																																																																																																																											8
AAAGG/CCTTT	2																																																																																																																																																																																																												2
AAAGT/ACTTT	19	1	1																																																																																																																																																																																																										21
AAATC/ATTTG	81	6																																																																																																																																																																																																											87
AAATG/ATTTC	58	2																																																																																																																																																																																																											60
AAATT/AATTT	1127	54	4	2	1																																																																																																																																																																																																								1188
AACAG/CTGTT	1																																																																																																																																																																																																												1
AACAT/ATGTT	6	1																																																																																																																																																																																																											7
AACCC/GGGTT	5																																																																																																																																																																																																												5
AACTC/AGTTG	7																																																																																																																																																																																																												7
AACTT/AAGTT	14	1																																																																																																																																																																																																											15
AAGAC/CTTGT	4																																																																																																																																																																																																												4
AAGAG/CTCTT	13																																																																																																																																																																																																												13
AAGAT/ATCTT	14	1	1																																																																																																																																																																																																										16
AAGCT/AGCTT	3		1																																																																																																																																																																																																										4
AAGGC/CCTTG	1																																																																																																																																																																																																												1
AAGGT/ACCTT	2																																																																																																																																																																																																												2
AAGTC/ACTTG	2																																																																																																																																																																																																												2
AATAC/ATTGT	22	2																																																																																																																																																																																																											24
AATAG/ATTCT	148	25	2																																																																																																																																																																																																										175
AATAT/ATATT	85	6		2	1			1																																																																																																																																																																																																					95
AATCC/ATTGG	7	1																																																																																																																																																																																																											8
AATCG/ATTCG	4	3																																																																																																																																																																																																											7
AATCT/AGATT	26	5																																																																																																																																																																																																											31
AATGC/ATTGC	1																																																																																																																																																																																																												1
AATGG/ATTCC	3																																																																																																																																																																																																												3
AATGT/ACATT	4	1																																																																																																																																																																																																											5
AATTC/AATTG	32																																																																																																																																																																																																												32
ACAGT/ACTGT		1																																																																																																																																																																																																											1
ACATC/ATGTG	2																																																																																																																																																																																																												2
ACATG/ATGTC	2																																																																																																																																																																																																												2
ACCAG/CTGGT	1																																																																																																																																																																																																												1
ACCCC/GGGGT	1																																																																																																																																																																																																												1
ACCCT/AGGGT	1																																																																																																																																																																																																												1
ACTAG/AGTCT	1																																																																																																																																																																																																												1
ACTAT/AGTAT	2																																																																																																																																																																																																												2
ACTCT/AGAGT	4																																																																																																																																																																																																												4
ACTGC/AGTGC	2																																																																																																																																																																																																												2
AGAGC/CTCTG	1																																																																																																																																																																																																												1
AGATC/ATCTG	1																																																																																																																																																																																																												1
AGATG/ATCTC	3																																																																																																																																																																																																												3
AGCAT/ATGCT	1																																																																																																																																																																																																												1
AGCCG/CGGCT	1																																																																																																																																																																																																												1
AGCTC/AGCTG	28																																																																																																																																																																																																												28
AGGAT/ATCCT	1																																																																																																																																																																																																												1
ATATC/ATATG	10																																																																																																																																																																																																												10
ATGCC/ATGGC	1																																																																																																																																																																																																												1
AAAAAC/GTTTTT	15	1																																																																																																																																																																																																											16
AAAAAG/CTTTTT	53																																																																																																																																																																																																												53
AAAAAT/ATTTTT	188	4																																																																																																																																																																																																											192
AAAACC/GGTTTT	1																																																																																																																																																																																																												1
AAAACT/AGTTTT	4																																																																																																																																																																																																												4
AAAAGC/CTTTTG	1																																																																																																																																																																																																												1
AAAAGT/ACTTTT	8																																																																																																																																																																																																												8
AAAATC/ATTTTG	22																																																																																																																																																																																																												22
AAAATG/ATTTTC	12	1																																																																																																																																																																																																											13
AAAATT/AATTTT	121	2	2																																																																																																																																																																																																										125
AAACAC/GTGTTT	2																																																																																																																																																																																																												2
AAACAG/CTGTTT	2																																																																																																																																																																																																												2
AAACAT/ATGTTT	3																																																																																																																																																																																																												3
AAACCC/GGGTTT	1						1																				1																																																																																																																																																																																		3
AAACCT/AGGTTT	3																																																																																																																																																																																																												3
AAACTT/AAGTTT	2																																																																																																																																																																																																												2
AAAGAG/CTCTTT	2																																																																																																																																																																																																												2
AAAGAT/ATCTTT	2	2																																																																																																																																																																																																											4
AAAGTG/ACTTTC	1	1																																																																																																																																																																																																											2
AAATAC/ATTTGT	3																																																																																																																																																																																																												3
AAATAG/ATTTCT	5																																																																																																																																																																																																												5
AAATAT/ATATTT	55	3																																																																																																																																																																																																											58
AAATCC/ATTTGG	1																																																																																																																																																																																																												1
AAATCT/AGATTT	4																																																																																																																																																																																																												4
AAATGT/ACATTT	1																																																																																																																																																																																																												1
AAATTC/AATTTG	6	1																																																																																																																																																																																																											7
AAATTG/AATTTC	3																																																																																																																																																																																																												3
AAATTT/AAATTT	52	1																																																																																																																																																																																																											53
AACAAT/ATTGTT	26	4																																																																																																																																																																																																											30
AACACG/CGTGTT	1																																																																																																																																																																																																												1
AACATT/AATGTT	1	2																																																																																																																																																																																																											3
AACCAT/ATGGTT	2																																																																																																																																																																																																												2
AACCCC/GGGGTT	39	26	27	19	15	15	4	11	8	7	5	5	4	8	2	4	3	3	3			2	2	2	3	3	1		2	1	1	7	3			3	2		2		2	5	3	4	3	1	5	2	3	3	3	4	3	3	1	3	2	2	1	4	1	2	3	3	4	1	4	4	4	2	5	5	6	3	3	8	3	5	4	5	2				3	1			1		3				1	1		1			2						1	1				1	1																																																																																												393
AACGAT/ATCGTT	1																																																																																																																																																																																																												1
AACTGG/AGTTCC	1																																																																																																																																																																																																												1
AACTTC/AAGTTG	1																																																																																																																																																																																																												1
AAGAAT/ATTCTT	4																																																																																																																																																																																																												4
AAGACG/CGTCTT	1																																																																																																																																																																																																												1
AAGATC/ATCTTG	1																																																																																																																																																																																																												1
AAGATG/ATCTTC	28																																																																																																																																																																																																												28
AAGATT/AATCTT	2																																																																																																																																																																																																												2
AAGCAT/ATGCTT	2																																																																																																																																																																																																												2
AAGCTC/AGCTTG	1																																																																																																																																																																																																												1
AAGGAC/CCTTGT	1																																																																																																																																																																																																												1
AAGTAG/ACTTCT	2																																																																																																																																																																																																												2
AATAGC/ATTGCT	3																																																																																																																																																																																																												3
AATAGG/ATTCCT	1																																																																																																																																																																																																												1
AATAGT/ACTATT	7	1		1																																																																																																																																																																																																									9
AATATC/ATATTG	1																																																																																																																																																																																																												1
AATATG/ATATTC	1																																																																																																																																																																																																												1
AATATT/AATATT	10																																																																																																																																																																																																												10
AATCAC/ATTGTG	1																																																																																																																																																																																																												1
AATCAT/ATGATT	6																																																																																																																																																																																																												6
AATCTG/AGATTC	1																																																																																																																																																																																																												1
AATGAG/ATTCTC	1																																																																																																																																																																																																												1
AATGAT/ATCATT	4																																																																																																																																																																																																												4
AATGCT/AGCATT	2																																																																																																																																																																																																												2
AATGGT/ACCATT	1																																																																																																																																																																																																												1
AATTAC/AATTGT	1																																																																																																																																																																																																												1
AATTAG/AATTCT	4																																																																																																																																																																																																												4
AATTAT/AATTAT	10																																																																																																																																																																																																												10
ACACAT/ATGTGT		1																																																																																																																																																																																																											1
ACAGAG/CTCTGT	1																																																																																																																																																																																																												1
ACCACG/CGTGGT	1																																																																																																																																																																																																												1
ACCATC/ATGGTG	1																																																																																																																																																																																																												1
ACCCAT/ATGGGT	1																																																																																																																																																																																																												1
ACCCCC/GGGGGT	2																																																																																																																																																																																																												2
ACCTGC/AGGTGC	1																																																																																																																																																																																																												1
ACGAGC/CGTGCT		1																																																																																																																																																																																																											1
ACGATG/ATCGTC	1																																																																																																																																																																																																												1
ACTATC/AGTGAT	2																																																																																																																																																																																																												2
ACTCAT/AGTATG	1																																																																																																																																																																																																												1
ACTGCC/AGTGGC	1																																																																																																																																																																																																												1
ACTGCT/AGCAGT	1																																																																																																																																																																																																												1
AGAGAT/ATCTCT	2																																																																																																																																																																																																												2
AGATAT/ATATCT	2																																																																																																																																																																																																												2
AGCAGG/CCTGCT	1																																																																																																																																																																																																												1
AGCTGC/AGCTGC	1																																																																																																																																																																																																												1
ATATGC/ATATGC	1																																																																																																																																																																																																												1
ATGGCC/ATGGCC	1																																																																																																																																																																																																												1
