Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-16/megassr/results/hub_GCA_046543805.1/fasta/hub_GCA_046543805.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              49
Total size of examined sequences (bp):           4629149
Total number of identified SSRs:                 24
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	4
4	4
5	5
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
CA	-	-	-	1																			1
TA	-	-	-	1																			1
ACC	-	-	1																				1
CTG	-	-	1																				1
GAT	-	-	1																				1
GGC	-	-	1																				1
ATTA	-	1																					1
TAAA	-	1																					1
TTAT	-														1								1
TTTA	-	1																					1
AAATT	1																						1
GTAGG	1																						1
GTTTT	1																						1
TTATT	1																						1
TTTGG		1																					1
AAAAAT	1																						1
AAAATA	1																						1
AAGTAA				1																			1
CATTAG	1																						1
CGGTGA	1																						1
GATGGT	1																						1
GGCAAT	1																						1
GGTGTT																						1	1
TAATTC	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
AC/GT	-	-	-	1																			1
AT/AT	-	-	-	1																			1
ACC/GGT	-	-	1																				1
AGC/CTG	-	-	1																				1
ATC/ATG	-	-	1																				1
CCG/CGG	-	-	1																				1
AAAT/ATTT	-	2													1								3
AATT/AATT	-	1																					1
AAAAC/GTTTT	1																						1
AAAAT/ATTTT	1																						1
AAACC/GGTTT		1																					1
AAATT/AATTT	1																						1
ACCCT/AGGGT	1																						1
AAAAAT/ATTTTT	2																						2
AAAAGT/ACTTTT				1																			1
AACACC/GGTGTT																						1	1
AATGCT/AGCATT	1																						1
AATGGC/ATTGCC	1																						1
AATTAG/AATTCT	1																						1
ACCATC/ATGGTG	1																						1
ACCGTC/ACGGTG	1																						1
