Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-40/megassr/results/hub_GCA_046543765.1/fasta/hub_GCA_046543765.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              72
Total size of examined sequences (bp):           5204407
Total number of identified SSRs:                 41
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	5
3	14
5	6
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1																										1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																					1								1	2
CG	-	-	-	3	1																																										4
GC	-	-	-	1																																											1
CAG	-	-	2																																												2
CCA	-	-	1																																												1
CCG	-	-	1																																												1
CGC	-	-	2																																												2
CGG	-	-	3																																												3
CTG	-	-	1																																												1
GAC	-	-	1																																												1
GCC	-	-	1																																												1
GCG	-	-	1																																												1
GGC	-	-	1																																												1
AATAA	1																																														1
CGCGG	1																																														1
CGTGG	1																																														1
GCCCG	1																																														1
GGCGC	1																																														1
TTTAT	1																																														1
ACTTCA	1																																														1
CACCAG	1																																														1
CCGGAG		1																																													1
CGACTC	4																																														4
CGACTT	1																																														1
GACGAA	1																																														1
GACTCG	1																																														1
GATACC	1																																														1
GTGGAA	1																																														1
TGGTGA	1																																														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1																	1								1	3
CG/CG	-	-	-	4	1																																										5
ACC/GGT	-	-	1																																												1
ACG/CGT	-	-	1																																												1
AGC/CTG	-	-	3																																												3
CCG/CGG	-	-	9																																												9
AAAAT/ATTTT	2																																														2
ACGCC/CGTGG	1																																														1
CCCGG/CCGGG	1																																														1
CCGCG/CGCGG	2																																														2
AACTTC/AAGTTG	1																																														1
AAGACG/CGTCTT	1																																														1
AAGTCG/ACTTCG	1																																														1
AAGTGG/ACTTCC	1																																														1
ACCAGC/CTGGTG	1																																														1
ACCATC/ATGGTG	1																																														1
ACCGAT/ATCGGT	1																																														1
ACTCCG/AGTCGG	4																																														4
ACTCGG/AGTCCG	1																																														1
AGCCGG/CCGGCT		1																																													1
