Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_046056295.1/fasta/hub_GCA_046056295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              32943
Total size of examined sequences (bp):           34182621
Total number of identified SSRs:                 20599
Number of SSR containing sequences:              9799
Number of sequences containing more than 1 SSR:  3908
Number of SSRs present in compound formation:    2771


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	631
2	5077
3	9540
4	1785
5	1994
6	1572

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	46	50	31	20	18	16	8	11	11	5	5	3		1	1	3				1																																						230
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	15	8	6	7	5	6	2	1	1	1			4				2	1	1						1		1						1		1			1									1							3	4	4	4	81
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	14	10	2	2	1	2	4	1	2	1		1	1		1		2												2				1	1		1	1	2	1					1			1							1	6	2		64
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	51	41	32	26	19	20	14	15	12	5	3	6	3	4		1	1		1		1			1																																		256
AC	-	-	-	140	88	51	31	16	5	8	5	4	4	2																																																													354
AG	-	-	-	98	90	51	41	9	17	4	6	5	2	4	4	3	3	2	2	2	1	1							1							2																																							348
AT	-	-	-	637	268	137	76	67	46	27	21	17	12	9	12	5	8	4	1	1	2	1																																																					1351
CA	-	-	-	117	62	36	26	19	4	9	3	4	1	1		2	1		1																																																								286
CG	-	-	-	7	1																																																																						8
CT	-	-	-	92	54	39	21	9	13	5	2	8	2		4	4		1						1									1																																										256
GA	-	-	-	84	49	42	16	12	11	2	3	1			2	1	1																																																										224
GC	-	-	-	4																																																																							4
GT	-	-	-	122	55	37	26	11	5	7	2	5	1	3	1		1		1		1																																																						278
TA	-	-	-	562	253	130	81	39	30	16	17	9	6	7	8	7	3	4	2			2		1																																																			1177
TC	-	-	-	101	83	57	41	24	17	6	4	8	4	1	2	4	1		1																																																								354
TG	-	-	-	194	97	65	24	21	15	2	6	6	1	1	2		1		1	1																																																							437
AAC	-	-	149	64	33	13	6	2	1	2							1																																																										271
AAG	-	-	37	6	3				1																																																																		47
AAT	-	-	487	233	131	80	55	61	38	30	15	8	11	11	9	4	5	3		2	2	1	1																																																				1187
ACA	-	-	59	27	13	6																																																																					105
ACC	-	-	42	16	3	5																																																																					66
ACG	-	-	4	1					1																																																																		6
ACT	-	-	14	14	5	2			1																																																																		36
AGA	-	-	21	3	1		1																																																																				26
AGC	-	-	107	51	19	8	2																																																																				187
AGG	-	-	9	7			1	1																																																																			18
AGT	-	-	22	16	5	3	2	2		1																																																																	51
ATA	-	-	229	79	40	40	19	18	5	8	7	4	4	2	1	1						1																																																					458
ATC	-	-	25	7	3	2																																																																					37
ATG	-	-	25	5	1	1													1																																																								33
ATT	-	-	266	132	59	27	23	35	22	11	12	3	4	4		1	2		1				2																																																				604
CAA	-	-	108	52	20	13	5	1	1	2	2																																																																204
CAC	-	-	60	28	13	2		1		1					1																																																												106
CAG	-	-	265	93	34	20	4	1																																																																			417
CAT	-	-	29	11	5	2	2																																																																				49
CCA	-	-	68	24	6	5	2																																																																				105
CCG	-	-	40	12	2	2																																																																					56
CCT	-	-	29	8	3	3	1																																																																				44
CGA	-	-	4	4																																																																							8
CGC	-	-	35	4			3																																																																				42
CGG	-	-	43	10	3	1																																																																					57
CGT	-	-	7	1	3																																																																						11
CTA	-	-	13	5	3	5	5						1	1																																																													33
CTC	-	-	26	6	1																																																																						33
CTG	-	-	164	76	31	15	7	2			2												1																																																				298
CTT	-	-	31	9		2																																																																					42
GAA	-	-	30	8	1																																																																						39
GAC	-	-	7	2	2																																																																						11
GAG	-	-	42	6	1																																																																						49
GAT	-	-	24	14	6		1	2										1																																																									48
GCA	-	-	142	68	21	6	1																																																																				238
GCC	-	-	44	15	5	1	1																																																																				66
GCG	-	-	45	10	2																																																																						57
GCT	-	-	156	91	33	10	2																																																																				292
GGA	-	-	28	8	1	1		1																																																																			39
GGC	-	-	37	8	2	2		1																																																																			50
GGT	-	-	47	26	8	5																																																																					86
GTA	-	-	19	7	1	2	5						1																																																														35
GTC	-	-	8	2																																																																							10
GTG	-	-	65	28	13	1		1																																																																			108
GTT	-	-	72	30	10	5	1	2			1																																																																121
TAA	-	-	246	108	55	33	20	21	23	8	4	8	8	1	1						1																																																						537
TAC	-	-	25	13	4	5	2	2																																																																			51
TAG	-	-	18	13	4	5	6	3	3	1		1		1																																																													55
TAT	-	-	343	126	104	62	51	44	34	25	21	7	3	3	3	4		1			1	1	1																																																				834
TCA	-	-	24	5	5	5			1																																																																		40
TCC	-	-	34	12	4																																																																						50
TCG	-	-	17	8		2																																																																					27
TCT	-	-	18	1	1		1																																																																				21
TGA	-	-	17	4	4	1																																																																					26
TGC	-	-	143	72	23	11	2																																																																				251
TGG	-	-	52	17	6	2	1																																																																				78
TGT	-	-	122	52	13	5		2																																																																			194
TTA	-	-	488	215	112	64	53	34	23	15	13	14	10	8	4	3	4		1	4			1																																																				1066
TTC	-	-	53	7	2	2																																																																					64
TTG	-	-	220	74	34	16	8	6	1	1																																																																	360
AAAC	-	64	20	8	4	2	1																																																																				99
AAAG	-	29	8	4																																																																							41
AAAT	-	140	41	27	5	2	1	1																																																																			217
AACA	-	16	3																																																																								19
AAGA	-	9	4		2	1																																																																					16
AAGC	-	1																																																																									1
AAGG	-	5																																																																									5
AAGT	-		1																																																																								1
AATA	-	78	19	8	3	2	1																																																																				111
AATC	-	4	1	1	1																																																																						7
AATG	-	3	1	1																																																																							5
AATT	-	3	1																																																																								4
ACAA	-	8	2	1																																																																							11
ACAG	-		1																																																																								1
ACAT	-	9	4	2																																																																							15
ACTA	-	1																																																																									1
ACTC	-		1																																																																								1
AGAA	-	6	1		1																																																																						8
AGAT	-	1	1	1																																																																							3
AGCA	-	1																																																																									1
AGGG	-	1																																																																									1
AGGT	-		1																																																																								1
AGTT	-	1																																																																									1
ATAA	-	45	7	3	1	1																																																																					57
ATAC	-	8	1	1																																																																							10
ATAG	-	4																																																																									4
ATCA	-	4	1	1																																																																							6
ATCT	-	1	1																																																																								2
ATGA	-	3	1		1																																																																						5
ATGG	-	3																																																																									3
ATGT	-	7	3	1	1																																																																						12
ATTA	-	2	1																																																																								3
ATTC	-	4																																																																									4
ATTG	-	3	1			1																																																																					5
ATTT	-	66	22	6	1	1																																																																					96
CAAA	-	22	7	3	2																																																																						34
CAAT	-			1	1																																																																						2
CACC	-	1																																																																									1
CACG	-	1																																																																									1
CAGT	-		1																																																																								1
CATA	-	5	5	2																																																																							12
CATG	-	1																																																																									1
CATT	-	3																																																																									3
CCAA	-	1																																																																									1
CGTG	-	2																																																																									2
CTAA	-			1																																																																							1
CTAC	-	1																																																																									1
CTAG	-		1																																																																								1
CTAT	-	1																																																																									1
CTCA	-	2		2																																																																							4
CTGA	-	1																																																																									1
CTGT	-	1																																																																									1
CTTC	-			1																																																																							1
CTTT	-	6	1	1																																																																							8
GAAA	-	11	6	2	1																																																																						20
GAAG	-	2	1	1																																																																							4
GAAT	-	2		2																																																																							4
GACT	-	1																																																																									1
GAGT	-	2	1																																																																								3
GATA	-	3																																																																									3
GATG	-	1																																																																									1
GATT	-		1	1																																																																							2
GCAC	-	1																																																																									1
GCAT	-	1																																																																									1
GGAA	-	1			1																																																																						2
GGTA	-	1																																																																									1
GTAT	-	2		1		2																																																																					5
GTGA	-	2	1																																																																								3
GTGC	-			1																																																																							1
GTTG	-	1																																																																									1
GTTT	-	13	1	1	1																																																																						16
TAAA	-	39	15	3	2																																																																						59
TAAT	-	3																																																																									3
TACA	-	6	2																																																																								8
TAGT	-	1		1																																																																							2
TATC	-		1																																																																								1
TATG	-	18	3	3		1	1																																																																				26
TATT	-	79	30	11	1		1																																																																				122
TCAA	-	1																																																																									1
TCAC	-	1																																																																									1
TCCC	-	1																																																																									1
TCCT	-	1																																																																									1
TCGT	-	1																																																																									1
TCTA	-			1																																																																							1
TCTT	-	8	2	1																																																																							11
TGAA	-	1	2																																																																								3
TGAG	-	1																																																																									1
TGAT	-	4																																																																									4
TGCC	-	1																																																																									1
TGTA	-	10		1																																																																							11
TGTT	-	13	12	3																																																																							28
TTAA	-	3	1																																																																								4
TTAG	-	1																																																																									1
TTAT	-	76	36	10	5							1																																																															128
TTCC	-	2																																																																									2
TTCG	-	1																																																																									1
TTCT	-	9	4	1																																																																							14
TTGA	-	3	1																																																																								4
TTGC	-		1																																																																								1
TTGG	-	1																																																																									1
TTGT	-	21			1																																																																						22
TTTA	-	130	33	12	7	2																																																																					184
TTTC	-	40	7	3	3		1																																																																				54
TTTG	-	98	33	18	10		1																																																																				160
AAAAC	73	12	2																																																																								87
AAAAG	59	13	6																																																																								78
AAAAT	116	23	8	2																																																																							149
AAACA	15	11																																																																									26
AAACG	1																																																																										1
AAACT	1	2																																																																									3
AAAGA	16	2	1																																																																								19
AAAGC	4																																																																										4
AAAGG	4	1																																																																									5
AAAGT	3																																																																										3
AAATA	33	2	3																																																																								38
AAATT	2		1																																																																								3
AACAA	16	6		1																																																																							23
AACAC	3																																																																										3
AACAT				1																																																																							1
AACCA	1																																																																										1
AACCT	1																																																																										1
AACTA	1																																																																										1
AACTG			1																																																																								1
AAGAA	11	2																																																																									13
AAGAG	2																																																																										2
AAGCA	1																																																																										1
AAGGA	1	1																																																																									2
AAGTA		1																																																																									1
AATAA	31	3		1		1																																																																					36
AATAC	5																																																																										5
AATAT	11	2	2																																																																								15
AATGA	1																																																																										1
AATGT	1																																																																										1
AATTG	1	1	1																																																																								3
AATTT	3																																																																										3
ACAAA	22	5	1	1																																																																							29
ACAAC	4																																																																										4
ACAAT	1	1																																																																									2
ACACA	2																																																																										2
ACACT	1																																																																										1
ACCGC	1																																																																										1
ACGAG	1																																																																										1
ACGCT	1																																																																										1
ACGGC	1																																																																										1
ACGTA	1																																																																										1
ACTAG	1																																																																										1
ACTAT			1																																																																								1
ACTCA	1																																																																										1
ACTGG	1																																																																										1
ACTTT	1																																																																										1
AGAAA	20	3	2																																																																								25
AGAAC		2																																																																									2
AGAAG	1																																																																										1
AGAAT	2																																																																										2
AGACA	1																																																																										1
AGAGA	1																																																																										1
AGCAA	2																																																																										2
AGCAC	1																																																																										1
AGGAG	1	1																																																																									2
AGGGG	1																																																																										1
AGGTA	1																																																																										1
AGTAT	2																																																																										2
AGTGT	1																																																																										1
AGTTT	1																																																																										1
ATAAA	23	5	1	1																																																																							30
ATAAT	18		1		1																																																																						20
ATACA	7																																																																										7
ATACC	7																																																																										7
ATAGA	1																																																																										1
ATAGT	2																																																																										2
ATATA	19	6																																																																									25
ATATC	4		1																																																																								5
ATATG	2	1																																																																									3
ATATT	12																																																																										12
ATCAA	1																																																																										1
ATCAT	1																																																																										1
ATCCC	1																																																																										1
ATCGT	1		1																																																																								2
ATGCA	2																																																																										2
ATGGA	2																																																																										2
ATGTA	2																																																																										2
ATGTG		1																																																																									1
ATTAA		2			1																																																																						3
ATTAT	6					1																																																																					7
ATTGT			1																																																																								1
ATTTA	2																																																																										2
ATTTC	1																																																																										1
ATTTT	43	4	3																																																																								50
CAAAA	18	3	2																																																																								23
CAAAC	1																																																																										1
CAAAG	1																																																																										1
CAACA		1																																																																									1
CAATA	1	1																																																																									2
CAATG	1																																																																										1
CACAA	1																																																																										1
CACAC	1																																																																										1
CACAT	1	1																																																																									2
CACTT	1																																																																										1
CAGCA			1																																																																								1
CAGCT	1																																																																										1
CAGTT	2																																																																										2
CATAT		1	1																																																																								2
CCAAC	1																																																																										1
CCACA	1																																																																										1
CCACG	2																																																																										2
CCAGT		1																																																																									1
CCATC	1																																																																										1
CCATT	1																																																																										1
CCCCA	1																																																																										1
CCCCT	2																																																																										2
CCCGC	1																																																																										1
CCCTC	3																																																																										3
CCCTT			2																																																																								2
CCGCC	1																																																																										1
CCTCG	2																																																																										2
CCTGG	1																																																																										1
CCTTC	1																																																																										1
CCTTT	2																																																																										2
CGATA		1																																																																									1
CGATG	1																																																																										1
CGCTG	1																																																																										1
CGTGG	1																																																																										1
CTACA	1																																																																										1
CTATT	4																																																																										4
CTCCC	1																																																																										1
CTCGT	2																																																																										2
CTCTT	1																																																																										1
CTGTA	1																																																																										1
CTGTT	1																																																																										1
CTTAA	1																																																																										1
CTTTA	4		1																																																																								5
CTTTC	2																																																																										2
CTTTT	21	7																																																																									28
GAAAA	26	5	1																																																																								32
GAAAC	1																																																																										1
GAAAG	2																																																																										2
GAAAT		1	1																																																																								2
GAAGA	3																																																																										3
GAATC	1																																																																										1
GAATT	1																																																																										1
GACAC	1																																																																										1
GAGAG	1																																																																										1
GAGGA	2																																																																										2
GAGGG	3	1																																																																									4
GCAAA	2																																																																										2
GCATT	1																																																																										1
GCGCA	2																																																																										2
GCGGC	1																																																																										1
GCGGG	3																																																																										3
GCTGC	3																																																																										3
GCTTT	1																																																																										1
GGAAA		1																																																																									1
GGAGA	2																																																																										2
GGAGT	1																																																																										1
GGCAA	1																																																																										1
GGCCC	1																																																																										1
GGCGG	1																																																																										1
GGCTT	1																																																																										1
GGGAA	1																																																																										1
GGGAG	1																																																																										1
GGGGA	1																																																																										1
GGGGC	1																																																																										1
GGGGT	1																																																																										1
GGTAT	2																																																																										2
GGTCT	1																																																																										1
GGTGC	2																																																																										2
GGTGG	1																																																																										1
GGTTT	1																																																																										1
GTAAA	1																																																																										1
GTATA	3																																																																										3
GTATC		1																																																																									1
GTATG	1																																																																										1
GTCCA	1																																																																										1
GTGTA	2		1																																																																								3
GTGTC		1																																																																									1
GTGTT	3																																																																										3
GTTGG	1																																																																										1
GTTGT	2																																																																										2
GTTTT	19		1																																																																								20
TAAAA	30	8																																																																									38
TAAAC		1																																																																									1
TAAAG		1																																																																									1
TAAAT	4																																																																										4
TAATA	5	1																																																																									6
TAATG	1																																																																										1
TAATT	3																																																																										3
TACAA	2	1																																																																									3
TACAC	1																																																																										1
TACAT	2																																																																										2
TACCT	1																																																																										1
TACGA	1																																																																										1
TACTA	2		1																																																																								3
TACTC	1																																																																										1
TACTG		2																																																																									2
TAGTA	1																																																																										1
TATAA	5		1																																																																								6
TATAC		1		1																																																																							2
TATAG	2																																																																										2
TATAT	30	10	1																																																																								41
TATGA	4		1																																																																								5
TATGT	1																																																																										1
TATTA	19	7	1																																																																								27
TATTC	1																																																																										1
TATTG	1	1																																																																									2
TATTT	62	13		1																																																																							76
TCAAA		1		1																																																																							2
TCAAC	1																																																																										1
TCAAT	1																																																																										1
TCATA	1																																																																										1
TCCAA	2																																																																										2
TCCCG	1																																																																										1
TCCCT		1																																																																									1
TCTCC	1																																																																										1
TCTCG	2																																																																										2
TCTGT	2																																																																										2
TCTTC	2	1																																																																									3
TCTTT	19	5	1																																																																								25
TGAAA	2																																																																										2
TGAAG	1																																																																										1
TGAAT		2																																																																									2
TGACA	1																																																																										1
TGATA	2																																																																										2
TGATT	1	1																																																																									2
TGCAA	1																																																																										1
TGCGC	1																																																																										1
TGCTT	2																																																																										2
TGGCG	2																																																																										2
TGGTG			1																																																																								1
TGGTT	1	1																																																																									2
TGTAG		1																																																																									1
TGTAT	2	2																																																																									4
TGTCG	2	1																																																																									3
TGTGC	3	1	1																																																																								5
TGTGT	1																																																																										1
TGTTG	1																																																																										1
TGTTT	24	4																																																																									28
TTAAA	1																																																																										1
TTAAT	3																																																																										3
TTATA	8	1	1		1																																																																						11
TTATT	46	15	4																																																																								65
TTCAC	1																																																																										1
TTCAG	1																																																																										1
TTCAT	3																																																																										3
TTCCC	1																																																																										1
TTCTA	1	1																																																																									2
TTCTC	3	1																																																																									4
TTCTT	17	1																																																																									18
TTGAA	1																																																																										1
TTGAC	1																																																																										1
TTGAT		2																																																																									2
TTGCA	1																																																																										1
TTGGA	2																																																																										2
TTGGT	1																																																																										1
TTGTA	5																																																																										5
TTGTG	3																																																																										3
TTGTT	20	6		1					1																																																																		28
TTTAC	1																																																																										1
TTTAG	1	1																																																																									2
TTTAT	48	12	5																																																																								65
TTTCA	2																																																																										2
TTTCC	1		1																																																																								2
TTTCT	12	4	1																																																																								17
TTTGA	2																																																																										2
TTTGC	4	1																																																																									5
TTTGG	1																																																																										1
TTTGT	25	9	3																																																																								37
TTTTA	76	13	1	1																																																																							91
TTTTC	73	16	3	1																																																																							93
TTTTG	110	24	6	3																																																																							143
AAAAAC	20	2																																																																									22
AAAAAG	14	1																																																																									15
AAAAAT	25	4																																																																									29
AAAACA	11	2																																																																									13
AAAACG	2																																																																										2
AAAAGA	8	1																																																																									9
AAAAGC	1																																																																										1
AAAAGG	2																																																																										2
AAAATA	17	2																																																																									19
AAAATG	1																																																																										1
AAACAA	5																																																																										5
AAACAC	1																																																																										1
AAACAG	1																																																																										1
AAACAT	1																																																																										1
AAACTG	1																																																																										1
AAAGAA	6																																																																										6
AAAGAG	1																																																																										1
AAAGAT		1																																																																									1
AAAGGA	2																																																																										2
AAATAA	9																																																																										9
AAATAC	2																																																																										2
AAATAG		1	1																																																																								2
AAATAT	3																																																																										3
AAATGA	1																																																																										1
AACAAA	8																																																																										8
AACAAT	2																																																																										2
AACACC	1																																																																										1
AACAGC	1																																																																										1
AAGAAA	4	1																																																																									5
AAGAAT		1																																																																									1
AAGAGA	2	2																																																																									4
AAGCCC	1																																																																										1
AAGGAG		1																																																																									1
AAGGAT	1																																																																										1
AAGGGA	1																																																																										1
AATAAA	8	1	1																																																																								10
AATAAC	4																																																																										4
AATAAG	1																																																																										1
AATAGT	3																																																																										3
AATATA	3	1																																																																									4
AATATC	1																																																																										1
AATATT	2																																																																										2
AATGAT	1																																																																										1
AATGGA	1																																																																										1
AATTAA	1																																																																										1
ACAAAA	14		1																																																																								15
ACAAAC		1																																																																									1
ACAACC	2																																																																										2
ACAACG	2																																																																										2
ACAACT	1																																																																										1
ACAAGG	1																																																																										1
ACAATA	4																																																																										4
ACACAA	1																																																																										1
ACACAG	1																																																																										1
ACACAT	7	1																																																																									8
ACACGC	1																																																																										1
ACAGAA	1																																																																										1
ACAGCA	5	2																																																																									7
ACAGCC	4																																																																										4
ACATAC	2																																																																										2
ACATAT	2																																																																										2
ACATCC	1																																																																										1
ACATGA	1																																																																										1
ACCACA	2	1																																																																									3
ACCACT	2	1																																																																									3
ACCATC	1																																																																										1
ACCATG	1																																																																										1
ACCCCC	1																																																																										1
ACCCCT		1																																																																									1
ACCCGC	1																																																																										1
ACGACC	1																																																																										1
ACGGCA	2																																																																										2
ACGGCG	1																																																																										1
ACTAAT	1	1																																																																									2
ACTAGC	2	1																																																																									3
ACTATG	1																																																																										1
ACTATT	3	1																																																																									4
ACTCGG	1																																																																										1
ACTGCT	3																																																																										3
ACTGTA	1																																																																										1
AGAAAA	5																																																																										5
AGAAAC	1																																																																										1
AGAAGC	2																																																																										2
AGAAGG	1																																																																										1
AGAATA	1																																																																										1
AGAGAA	1																																																																										1
AGAGAC	1																																																																										1
AGAGAT	1																																																																										1
AGAGGA	1																																																																										1
AGCAAC	4																																																																										4
AGCAAT		1																																																																									1
AGCACC	1																																																																										1
AGCACG	1																																																																										1
AGCAGA	2																																																																										2
AGCAGT	3	1																																																																									4
AGCCAC	1																																																																										1
AGCCAG	1																																																																										1
AGCCGC	2																																																																										2
AGCCGT	1																																																																										1
AGCCTC	2																																																																										2
AGCGCC	1																																																																										1
AGCGGC	1																																																																										1
AGCTAT	1																																																																										1
AGCTCC		1																																																																									1
AGCTGA	1																																																																										1
AGGAAA		1																																																																									1
AGGAAG	1																																																																										1
AGGCAG	1																																																																										1
AGGCCA	1																																																																										1
AGGGAG	1																																																																										1
AGGGGG	1																																																																										1
AGGGTT									1																																																																		1
AGTAAA	1	1																																																																									2
AGTAAT	1	1																																																																									2
AGTTGT	3																																																																										3
AGTTTC	1																																																																										1
AGTTTT	1																																																																										1
ATAAAA	13																																																																										13
ATAAAG	1																																																																										1
ATAAAT	4	1																																																																									5
ATAATC	1																																																																										1
ATAATG	3																																																																										3
ATAATT		1																																																																									1
ATACAC		2																																																																									2
ATACAT	2																																																																										2
ATAGAG	1																																																																										1
ATAGGT	1																																																																										1
ATAGTA		1																																																																									1
ATAGTT	1																																																																										1
ATATAA	9	3																																																																									12
ATATAC	2																																																																										2
ATATAG	1																																																																										1
ATATCA	1																																																																										1
ATATGT	1																																																																										1
ATATTT	1																																																																										1
ATCAAT		1																																																																									1
ATCACC	3																																																																										3
ATCAGC	2																																																																										2
ATCCAC	1																																																																										1
ATCTGT		1																																																																									1
ATCTTC	1																																																																										1
ATGAAG	1																																																																										1
ATGAGG	1																																																																										1
ATGATA					1																																																																						1
ATGATC	1																																																																										1
ATGCAG	1																																																																										1
ATGCTG	1																																																																										1
ATGGTG	1																																																																										1
ATTACC	1																																																																										1
ATTAGT	1																																																																										1
ATTATA	1																																																																										1
ATTATC	1																																																																										1
ATTATG	1																																																																										1
ATTGTT	1																																																																										1
ATTTAT	2	2																																																																									4
ATTTCA	1																																																																										1
ATTTTT	13	2																																																																									15
CAAAAA	4																																																																										4
CAAAAC	1																																																																										1
CAACAC		2																																																																									2
CAACAG	7	5																																																																									12
CAACAT	2	1																																																																									3
CAACGG	1																																																																										1
CAAGCA	1																																																																										1
CAATAA	4																																																																										4
CAATAC		1																																																																									1
CAATCA	1																																																																										1
CAATCG	2	1																																																																									3
CAATTC	1																																																																										1
CAATTG	1																																																																										1
CACAAA	1																																																																										1
CACAAC		1																																																																									1
CACACG		1																																																																									1
CACAGC		1																																																																									1
CACAGT	2																																																																										2
CACATA		1																																																																									1
CACCAA	2																																																																										2
CACCAG	3	1	1																																																																								5
CACCAT	2	1																																																																									3
CACCGC	3	1	1																																																																								5
CACGTC	1																																																																										1
CACTGG	1	1																																																																									2
CAGAGG	1																																																																										1
CAGCAA	16	2																																																																									18
CAGCAC	1																																																																										1
CAGCAT	6	1																																																																									7
CAGCCA	1																																																																										1
CAGCCG	4	3																																																																									7
CAGCGG	3																																																																										3
CAGCGT	1																																																																										1
CAGGAG	2																																																																										2
CAGGCA	1																																																																										1
CAGGCT	2																																																																										2
CAGTAG	1																																																																										1
CAGTAT	1																																																																										1
CAGTTG	1																																																																										1
CATAAT	1																																																																										1
CATACA	2																																																																										2
CATATA	3																																																																										3
CATATT		1																																																																									1
CATCAA	2																																																																										2
CATCAG	3																																																																										3
CATCCT	1																																																																										1
CATCGC	1																																																																										1
CATCGG	1																																																																										1
CATCGT	1																																																																										1
CATCTA	1																																																																										1
CATCTC			1																																																																								1
CATGAT		1																																																																									1
CATGTT	2																																																																										2
CATTAT	1																																																																										1
CATTCC	1																																																																										1
CATTGC	1																																																																										1
CATTGG		1																																																																									1
CATTTA		1																																																																									1
CATTTT	1																																																																										1
CCAACA	1																																																																										1
CCAATA	1																																																																										1
CCACAG	2																																																																										2
CCACCC	1																																																																										1
CCACCG	8	1																																																																									9
CCACGC	2																																																																										2
CCACTA	1																																																																										1
CCACTG	1																																																																										1
CCAGAG	1																																																																										1
CCAGCA	1																																																																										1
CCAGCT	1	1																																																																									2
CCAGTC	1																																																																										1
CCAGTG	1	1																																																																									2
CCATAG	2																																																																										2
CCATCA	2																																																																										2
CCATGA	1																																																																										1
CCCACC	1																																																																										1
CCCAGA	1																																																																										1
CCCCCG	1																																																																										1
CCCCTC	1																																																																										1
CCCTCT	2																																																																										2
CCCTTC	2																																																																										2
CCGCAG	4																																																																										4
CCGCAT		1																																																																									1
CCGCCA	3																																																																										3
CCGCTG	2																																																																										2
CCGCTT				1																																																																							1
CCTACA	1																																																																										1
CCTAGT	1																																																																										1
CCTCAG	1																																																																										1
CCTCAT										1																																																																	1
CCTCGG	1																																																																										1
CCTCTC	1																																																																										1
CCTGAC	1																																																																										1
CCTGGG	1																																																																										1
CCTTGC	1																																																																										1
CGACGC	1																																																																										1
CGACGG	1																																																																										1
CGATGA	1																																																																										1
CGCACA	2																																																																										2
CGCAGC	4	1																																																																									5
CGCCAC	1																																																																										1
CGCCTC	1																																																																										1
CGCCTG	1																																																																										1
CGCTGC	3	1																																																																									4
CGGCAG	5																																																																										5
CGGCAT	1																																																																										1
CGGCGA	1																																																																										1
CGGCTG	1																																																																										1
CGGCTT	3																																																																										3
CGGTGG	3																																																																										3
CGTCCA	1																																																																										1
CGTCTG		1																																																																									1
CGTGGA	2																																																																										2
CGTGTG	1																																																																										1
CTAACC	1		1																																																																								2
CTAATA			1																																																																								1
CTACCA	1																																																																										1
CTAGCA	1																																																																										1
CTAGCG	1																																																																										1
CTAGCT	3																																																																										3
CTATTA	5																																																																										5
CTATTG	1																																																																										1
CTCATC		1																																																																									1
CTCCAG	1																																																																										1
CTCCTT	1	1																																																																									2
CTCGCT	1																																																																										1
CTCGTT	1																																																																										1
CTCTGC	2																																																																										2
CTCTGG		1																																																																									1
CTCTTC	1																																																																										1
CTCTTT		1																																																																									1
CTGAGG	1																																																																										1
CTGCAC		1																																																																									1
CTGCAG	2																																																																										2
CTGCCA	1																																																																										1
CTGCCG	5																																																																										5
CTGCGA	1																																																																										1
CTGCGG		1																																																																									1
CTGCTC	2																																																																										2
CTGCTT		1																																																																									1
CTGGCC	1																																																																										1
CTGGTG		1																																																																									1
CTGTCG	1																																																																										1
CTGTGA	1																																																																										1
CTGTGG	2	2																																																																									4
CTGTTG	3																																																																										3
CTTCTC	1	2																																																																									3
CTTCTG	1																																																																										1
CTTGCC	1	1																																																																									2
CTTTTA	1																																																																										1
CTTTTC	1																																																																										1
CTTTTG	1																																																																										1
CTTTTT	12																																																																										12
GAAAAA	3																																																																										3
GAAAAG	2																																																																										2
GAAAAT	1																																																																										1
GAAAGA		1																																																																									1
GAAGAG	2	1	1																																																																								4
GAAGCA	1																																																																										1
GAAGGA	1																																																																										1
GAAGGG	1																																																																										1
GACACA	2																																																																										2
GACCCT	1																																																																										1
GACGCC	1																																																																										1
GACGGC		1																																																																									1
GACTCC	1																																																																										1
GAGAAG	1																																																																										1
GAGAGT	1																																																																										1
GAGCGG	1																																																																										1
GAGGAA	2	1																																																																									3
GAGGCC	1																																																																										1
GAGGCG	1																																																																										1
GAGGCT	4																																																																										4
GAGGGC	1																																																																										1
GAGGGG	2																																																																										2
GATCAC	1																																																																										1
GATGAA	1																																																																										1
GATGAC	2																																																																										2
GATGAG	3																																																																										3
GATGCA	1																																																																										1
GATGCT	2																																																																										2
GATGGA		1																																																																									1
GATGGT	2	1																																																																									3
GATGTG	2																																																																										2
GATTCA	1																																																																										1
GATTGC		1	1																																																																								2
GCAAAA		1																																																																									1
GCAACA	1																																																																										1
GCAATA	1		1																																																																								2
GCAATC		1																																																																									1
GCAATT	2																																																																										2
GCACCA	2	1																																																																									3
GCAGAT	1																																																																										1
GCAGCC	4																																																																										4
GCAGCG	6	1																																																																									7
GCAGGA	1																																																																										1
GCAGTA	2																																																																										2
GCAGTC	1																																																																										1
GCAGTG	1																																																																										1
GCATCA	4	2																																																																									6
GCATCT	1																																																																										1
GCCACA	1																																																																										1
GCCACC	2																																																																										2
GCCACG	1																																																																										1
GCCAGC	1																																																																										1
GCCATT	1																																																																										1
GCCCCA	1																																																																										1
GCCCCC	1																																																																										1
GCCCCG	1																																																																										1
GCCGAC	1																																																																										1
GCCGAT	1																																																																										1
GCCGCA	3																																																																										3
GCCGCT	3	1			1																																																																						5
GCCGGT	1																																																																										1
GCCTCA	2																																																																										2
GCCTCC	1	1																																																																									2
GCCTGC		1																																																																									1
GCCTGG	1																																																																										1
GCCTTG	1																																																																										1
GCGGCA	2																																																																										2
GCGGCT	3																																																																										3
GCGGGG	1																																																																										1
GCGGTG	2	1																																																																									3
GCGTGG	1																																																																										1
GCGTGT	1																																																																										1
GCTACT	2	1																																																																									3
GCTAGA	1																																																																										1
GCTAGT	1																																																																										1
GCTCTT	1																																																																										1
GCTGAA	1																																																																										1
GCTGAC	1																																																																										1
GCTGAG	3	1																																																																									4
GCTGAT	2	1							1																																																																		4
GCTGCC	2	1																																																																									3
GCTGCG	5	1																																																																									6
GCTGGC	1																																																																										1
GCTGGT	1																																																																										1
GCTGTG	3																																																																										3
GCTGTT	6	1																																																																									7
GCTTCG	1																																																																										1
GCTTTT	1																																																																										1
GGAAAA	1																																																																										1
GGAAAG	1																																																																										1
GGAAGA	2																																																																										2
GGACAT	1																																																																										1
GGACGC	7																																																																										7
GGAGAA	1																																																																										1
GGAGAT	1																																																																										1
GGAGCC	1																																																																										1
GGAGGC	1																																																																										1
GGAGGG	2																																																																										2
GGATCA	1																																																																										1
GGATGA	3																																																																										3
GGCACT		1																																																																									1
GGCAGC	1																																																																										1
GGCGCG	1																																																																										1
GGCGGG	1																																																																										1
GGCGGT	8	1																																																																									9
GGCGTG	1																																																																										1
GGCTCT	1																																																																										1
GGCTGA	1																																																																										1
GGCTGC	3	1																																																																									4
GGCTGT	3	1																																																																									4
GGGACG	1																																																																										1
GGGAGA	1																																																																										1
GGGAGG	1																																																																										1
GGGATT	1																																																																										1
GGGGAA	1																																																																										1
GGGGCA		1																																																																									1
GGGGCG	1																																																																										1
GGGTTA	1							1		3																																																																	5
GGTAGT	2																																																																										2
GGTCAT	1																																																																										1
GGTCGT	1																																																																										1
GGTGAC	1																																																																										1
GGTGAT	1		1																																																																								2
GGTGCC	1																																																																										1
GGTGCT	1																																																																										1
GGTGGC	4	1																																																																									5
GGTGGG	2	1																																																																									3
GGTGTA	1																																																																										1
GGTGTG	1																																																																										1
GTAATA	1																																																																										1
GTACGT	1																																																																										1
GTAGCC	1																																																																										1
GTAGTC	1																																																																										1
GTAGTT	2																																																																										2
GTATTA	1																																																																										1
GTCCTC	1																																																																										1
GTCGTT	1	1																																																																									2
GTCTCT				1																																																																							1
GTGCCA	1																																																																										1
GTGGCG	1																																																																										1
GTGGCT	1																																																																										1
GTGGTA		1																																																																									1
GTGGTT	1																																																																										1
GTGTAT	3																																																																										3
GTTATT	1																																																																										1
GTTGAT	1																																																																										1
GTTGCC	3																																																																										3
GTTGCT	4	2	3																																																																								9
GTTGTA	1																																																																										1
GTTGTG	1																																																																										1
GTTTAT	1																																																																										1
GTTTGT	1																																																																										1
GTTTTT	2	1																																																																									3
TAAAAA	14	1																																																																									15
TAAAAT	1																																																																										1
TAAATA	2																																																																										2
TAAATT	1																																																																										1
TAACAA	1																																																																										1
TAATAG	4	1																																																																									5
TAATGA		1																																																																									1
TAATTA	1																																																																										1
TAATTC		1	1																																																																								2
TACAAT	1																																																																										1
TACATA	1																																																																										1
TACTAA	1																																																																										1
TACTAT	4																																																																										4
TACTGC	2																																																																										2
TAGCAG	3																																																																										3
TAGCGT	1																																																																										1
TAGCTA	1																																																																										1
TAGGAG		1																																																																									1
TAGGAT	1																																																																										1
TAGGCT	1																																																																										1
TAGTAA	2																																																																										2
TAGTAT	4	1	1																																																																								6
TAGTGG	1																																																																										1
TATAAA	5																																																																										5
TATATC		1																																																																									1
TATATG	1																																																																										1
TATATT	14	7	1		1																																																																						23
TATCCA	2																																																																										2
TATCTC	1																																																																										1
TATGGA	1																																																																										1
TATGGT	1																																																																										1
TATGTG	4																																																																										4
TATTAA	1																																																																										1
TATTAC	4																																																																										4
TATTAG	1			1																																																																							2
TATTGC	2		1																																																																								3
TATTGT	1																																																																										1
TATTTA	5	1	1																																																																								7
TATTTT	15		1																																																																								16
TCACCA	1																																																																										1
TCAGCA	3																																																																										3
TCAGCC	1																																																																										1
TCAGCG	1																																																																										1
TCAGGG	1																																																																										1
TCATAA	1																																																																										1
TCATCC	2																																																																										2
TCATCG	2																																																																										2
TCATCT	2																																																																										2
TCATGA	1																																																																										1
TCCCTC		1																																																																									1
TCCTAT	1	1																																																																									2
TCCTCA	3																																																																										3
TCCTCG	1																																																																										1
TCCTCT	2																																																																										2
TCCTTT	1																																																																										1
TCGAAC	1																																																																										1
TCGCCG	1																																																																										1
TCGGCA			1																																																																								1
TCGTTG	1																																																																										1
TCTAGC	3																																																																										3
TCTATC	1																																																																										1
TCTCCA		1																																																																									1
TCTCCT	1																																																																										1
TCTCGT	1																																																																										1
TCTCTA	1																																																																										1
TCTCTT	4																																																																										4
TCTTCC	2																																																																										2
TCTTTC		1																																																																									1
TCTTTT	5	2																																																																									7
TGACGA	1																																																																										1
TGACTA	1																																																																										1
TGATAA		1																																																																									1
TGATGC	3																																																																										3
TGCACA	2																																																																										2
TGCATC	2																																																																										2
TGCCCC				1																																																																							1
TGCCGC	1																																																																										1
TGCGAT						1																																																																					1
TGCGGC	1																																																																										1
TGCTAC		1																																																																									1
TGCTAG	1	1																																																																									2
TGCTCC	1																																																																										1
TGCTGA	4	1																																																																									5
TGCTGG	1	1	1																																																																								3
TGCTGT	15	1																																																																									16
TGGAAT	1																																																																										1
TGGATG	1																																																																										1
TGGCAA	1																																																																										1
TGGCGG	3	1																																																																									4
TGGCTG	1		1																																																																								2
TGGTCA	1																																																																										1
TGGTGA	1	2																																																																									3
TGGTGC	1	1																																																																									2
TGTATA	1																																																																										1
TGTGCT	1																																																																										1
TGTGGC	1																																																																										1
TGTGGT	1	1																																																																									2
TGTTGA	1																																																																										1
TGTTGC	18																																																																										18
TGTTGG	2		1																																																																								3
TGTTTA		1																																																																									1
TGTTTC	1																																																																										1
TGTTTT	5																																																																										5
TTAATA	1																																																																										1
TTACTA	4																																																																										4
TTATAG		2																																																																									2
TTATAT	6	3																																																																									9
TTATCC	1																																																																										1
TTATCT		2																																																																									2
TTATTC	3																																																																										3
TTATTG	3		1																																																																								4
TTATTT	14	4	1																																																																								19
TTCAAT	1																																																																										1
TTCATT	1																																																																										1
TTCCTT	1																																																																										1
TTCGGC	1		1																																																																								2
TTCTCC	2																																																																										2
TTCTTA	2																																																																										2
TTCTTT	10																																																																										10
TTGCTG	5																																																																										5
TTGGCA		1																																																																									1
TTGTGG	1																																																																										1
TTGTTA	5	2																																																																									7
TTGTTT	8																																																																										8
TTTAAA	1	1																																																																									2
TTTAAT			1																																																																								1
TTTACT	1																																																																										1
TTTATA	3	2																																																																									5
TTTATG	1																																																																										1
TTTATT	14	4	3																																																																								21
TTTCAA	4																																																																										4
TTTCAT	1																																																																										1
TTTCTT	9																																																																										9
TTTGCT	2																																																																										2
TTTGTA	1																																																																										1
TTTGTG	1																																																																										1
TTTGTT	3																																																																										3
TTTTAC	1																																																																										1
TTTTAT	19	4	1			1																																																																					25
TTTTCA	3																																																																										3
TTTTCT	6																																																																										6
TTTTGA	1																																																																										1
TTTTGC	1																																																																										1
TTTTGT	8	2	1																																																																								11
TTTTTA	41	6																																																																									47
TTTTTC	21	2																																																																									23
TTTTTG	26	1	1																																																																								28

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	97	91	63	46	37	36	22	26	23	10	8	9	3	5	1	4	1		1	1	1			1																																		486
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	29	18	8	9	6	8	6	2	3	2		1	5		1		4	1	1						1		1		2				2	1	1	1	1	3	1					1			2							4	10	6	4	145
AC/GT	-	-	-	573	302	189	107	67	29	26	16	19	7	7	3	2	3		3	1	1																																																						1355
AG/CT	-	-	-	375	276	189	119	54	58	17	15	22	8	5	12	12	5	3	3	2	1	1		1					1				1			2																																							1182
AT/AT	-	-	-	1199	521	267	157	106	76	43	38	26	18	16	20	12	11	8	3	1	2	3		1																																																			2528
CG/CG	-	-	-	11	1																																																																						12
AAC/GTT	-	-	730	299	123	58	20	13	3	5	3						1																																																										1255
AAG/CTT	-	-	190	34	8	4	2		1																																																																		239
AAT/ATT	-	-	2059	893	501	306	221	213	145	97	72	44	40	29	18	13	11	4	2	6	4	3	5																																																				4686
ACC/GGT	-	-	334	139	49	20	3	2		1					1																																																												549
ACG/CGT	-	-	47	18	5	2			1																																																																		73
ACT/AGT	-	-	111	68	22	22	20	7	4	2		1	2	2																																																													261
AGC/CTG	-	-	977	451	161	70	18	3			2												1																																																				1683
AGG/CCT	-	-	168	47	10	4	2	2																																																																			233
ATC/ATG	-	-	144	46	24	11	3	2	1									1	1																																																								233
CCG/CGG	-	-	244	59	14	6	4	1																																																																			328
AAAC/GTTT	-	255	78	34	18	2	2																																																																				389
AAAG/CTTT	-	118	33	12	7	1	1																																																																				172
AAAT/ATTT	-	653	203	80	25	8	3	1				1																																																															974
AACC/GGTT	-	3																																																																									3
AACG/CGTT	-	2																																																																									2
AACT/AGTT	-	4		2																																																																							6
AAGC/CTTG	-	2	1																																																																								3
AAGG/CCTT	-	11	1	2	1																																																																						15
AAGT/ACTT	-		1																																																																								1
AATC/ATTG	-	19	5	4	2	1																																																																					31
AATG/ATTC	-	16	4	3	1																																																																						24
AATT/AATT	-	11	3																																																																								14
ACAG/CTGT	-	1	1																																																																								2
ACAT/ATGT	-	65	18	11	1	3	1																																																																				99
ACCC/GGGT	-	1																																																																									1
ACCT/AGGT	-	2	1																																																																								3
ACGC/CGTG	-	4		1																																																																							5
ACTC/AGTG	-	8	3	2																																																																							13
ACTG/AGTC	-	2	1																																																																								3
AGAT/ATCT	-	10	3	2																																																																							15
AGCT/AGCT	-		1																																																																								1
AGGC/CCTG	-	1																																																																									1
AGGG/CCCT	-	2																																																																									2
ATCC/ATGG	-	4																																																																									4
ATGC/ATGC	-	2																																																																									2
AAAAC/GTTTT	342	80	15	6					1																																																																		444
AAAAG/CTTTT	274	58	15	1																																																																							348
AAAAT/ATTTT	508	98	25	6		1																																																																					638
AAACC/GGTTT	6	1																																																																									7
AAACG/CGTTT	2																																																																										2
AAACT/AGTTT	4	4																																																																									8
AAAGC/CTTTG	17	1																																																																									18
AAAGG/CCTTT	12	3	1																																																																								16
AAAGT/ACTTT	10	2	1																																																																								13
AAATC/ATTTG	4	4		1																																																																							9
AAATG/ATTTC	9	1	1																																																																								11
AAATT/AATTT	18	2	1		1																																																																						22
AACAC/GTGTT	20	1																																																																									21
AACAG/CTGTT	3	2																																																																									5
AACAT/ATGTT	1			1																																																																							2
AACCC/GGGTT	2																																																																										2
AACCT/AGGTT	1																																																																										1
AACGT/ACGTT	1																																																																										1
AACTC/AGTTG	2																																																																										2
AACTG/AGTTC	3		1																																																																								4
AACTT/AAGTT	1																																																																										1
AAGAC/CTTGT	1																																																																										1
AAGAG/CTCTT	13	2																																																																									15
AAGCC/CTTGG	1																																																																										1
AAGGC/CCTTG	1																																																																										1
AAGGG/CCCTT	3	1	2																																																																								6
AAGGT/ACCTT	2																																																																										2
AAGTC/ACTTG	1																																																																										1
AAGTG/ACTTC	3																																																																										3
AATAC/ATTGT	24	6	1																																																																								31
AATAG/ATTCT	9	1																																																																									10
AATAT/ATATT	133	27	7		2	1																																																																					170
AATCC/ATTGG	4																																																																										4
AATCG/ATTCG	1																																																																										1
AATGC/ATTGC	6																																																																										6
AATGG/ATTCC	3																																																																										3
AATGT/ACATT	6																																																																										6
AATTC/AATTG	4	3	1																																																																								8
ACACC/GGTGT	2		1																																																																								3
ACACG/CGTGT	3	2																																																																									5
ACACT/AGTGT	6	1	1																																																																								8
ACAGC/CTGTG	4	1	2																																																																								7
ACAGT/ACTGT	1	2																																																																									3
ACATC/ATGTG	1	2																																																																									3
ACATG/ATGTC	1																																																																										1
ACCAG/CTGGT	1																																																																										1
ACCAT/ATGGT	10																																																																										10
ACCCC/GGGGT	3																																																																										3
ACCGC/CGGTG	3																																																																										3
ACGAG/CGTCT	5																																																																										5
ACGAT/ATCGT	2	2	1																																																																								5
ACGCC/CGTGG	5																																																																										5
ACGCT/AGCGT	1																																																																										1
ACGGC/CCGTG	1																																																																										1
ACGGG/CCCGT	1																																																																										1
ACTAG/AGTCT	1																																																																										1
ACTAT/AGTAT	12	1	2	1																																																																							16
ACTCC/AGTGG	1																																																																										1
ACTCT/AGAGT	1																																																																										1
ACTGG/AGTCC	2	1																																																																									3
AGAGG/CCTCT	7	1																																																																									8
AGCGC/CGCTG	7																																																																										7
AGCTC/AGCTG	1																																																																										1
AGGCC/CCTGG	1																																																																										1
AGGCG/CCTCG	2																																																																										2
AGGGG/CCCCT	12	1																																																																									13
ATATC/ATATG	14	2	3																																																																								19
ATCCC/ATGGG	2																																																																										2
ATCGC/ATGCG	1																																																																										1
CCCCG/CGGGG	7																																																																										7
CCCGG/CCGGG	1																																																																										1
CCGCG/CGCGG	1																																																																										1
AAAAAC/GTTTTT	114	8	3																																																																								125
AAAAAG/CTTTTT	103	7																																																																									110
AAAAAT/ATTTTT	202	28	7			1																																																																					238
AAAACC/GGTTTT	1																																																																										1
AAAACG/CGTTTT	2																																																																										2
AAAACT/AGTTTT	1																																																																										1
AAAAGC/CTTTTG	6	1																																																																									7
AAAAGG/CCTTTT	10	1																																																																									11
AAAAGT/ACTTTT	4	1																																																																									5
AAAATC/ATTTTG	1																																																																										1
AAAATG/ATTTTC	9																																																																										9
AAAATT/AATTTT	2		1																																																																								3
AAACAC/GTGTTT	5	1																																																																									6
AAACAG/CTGTTT	4																																																																										4
AAACAT/ATGTTT	3	1																																																																									4
AAACTG/AGTTTC	2																																																																										2
AAAGAG/CTCTTT	8	5																																																																									13
AAAGAT/ATCTTT	1	3																																																																									4
AAAGGG/CCCTTT	2																																																																										2
AAATAC/ATTTGT	3																																																																										3
AAATAG/ATTTCT		1	1																																																																								2
AAATAT/ATATTT	57	20	2		1																																																																						80
AAATGG/ATTTCC	1																																																																										1
AAATGT/ACATTT		1																																																																									1
AAATTG/AATTTC	6																																																																										6
AAATTT/AAATTT	2	1																																																																									3
AACAAT/ATTGTT	26	2	1																																																																								29
AACACC/GGTGTT	6	2	1																																																																								9
AACAGC/CTGTTG	85	13	3																																																																								101
AACATC/ATGTTG	6	1																																																																									7
AACATG/ATGTTC	3																																																																										3
AACCAC/GGTTGT	8	3																																																																									11
AACCAT/ATGGTT	1																																																																										1
AACCCT/AGGGTT	2		1					1	1	3																																																																	8
AACGAC/CGTTGT	4	1																																																																									5
AACGAG/CGTTCT	2																																																																										2
AACGCT/AGCGTT	1																																																																										1
AACGGC/CCGTTG	6																																																																										6
AACTAC/AGTTGT	7																																																																										7
AACTAT/AGTTAT	1	2																																																																									3
AACTCG/AGTTCG	1																																																																										1
AACTGC/AGTTGC	1																																																																										1
AACTGT/ACAGTT	1																																																																										1
AAGAAT/ATTCTT	7	1																																																																									8
AAGAGC/CTCTTG	1																																																																										1
AAGAGG/CCTCTT	13	2	1																																																																								16
AAGATG/ATCTTC	5																																																																										5
AAGCAC/CTTGTG	2																																																																										2
AAGCAG/CTGCTT	6	1																																																																									7
AAGCCC/CTTGGG	1																																																																										1
AAGCCG/CGGCTT	5		1																																																																								6
AAGCCT/AGGCTT	1																																																																										1
AAGCGG/CCGCTT				1																																																																							1
AAGCTG/AGCTTC	2																																																																										2
AAGGAC/CCTTGT	1																																																																										1
AAGGAG/CCTTCT	9	4																																																																									13
AAGGAT/ATCCTT	2																																																																										2
AAGGCC/CCTTGG	2																																																																										2
AAGGGC/CCCTTG	2	1																																																																									3
AAGGGG/CCCCTT	4																																																																										4
AATACC/ATTGGT	1	1																																																																									2
AATACT/AGTATT	9	2	2	1																																																																							14
AATAGC/ATTGCT	4	1	2																																																																								7
AATAGG/ATTCCT	1	1																																																																									2
AATAGT/ACTATT	31	4																																																																									35
AATATC/ATATTG	2	1																																																																									3
AATATG/ATATTC		1																																																																									1
AATATT/AATATT	4																																																																										4
AATCAC/ATTGTG	1																																																																										1
AATCAT/ATGATT	4																																																																										4
AATCCC/ATTGGG	1																																																																										1
AATCCT/AGGATT	1																																																																										1
AATCGC/ATTGCG	2	3	1			1																																																																					7
AATCTG/AGATTC	1																																																																										1
AATGAT/ATCATT	6	2			1																																																																						9
AATGCC/ATTGGC		2																																																																									2
AATGGC/ATTGCC	3																																																																										3
AATGGG/ATTCCC	1																																																																										1
AATGGT/ACCATT	1																																																																										1
AATTAC/AATTGT	1																																																																										1
AATTAG/AATTCT		1	1																																																																								2
AATTAT/AATTAT	2	1																																																																									3
AATTCC/AATTGG	2																																																																										2
AATTGC/AATTGC	3																																																																										3
ACACAG/CTGTGT	3																																																																										3
ACACAT/ATGTGT	18	4																																																																									22
ACACCC/GGGTGT	1																																																																										1
ACACCT/AGGTGT	2																																																																										2
ACACGC/CGTGTG	5	1																																																																									6
ACACGT/ACGTGT	1																																																																										1
ACAGAG/CTCTGT	1			1																																																																							2
ACAGAT/ATCTGT		1																																																																									1
ACAGCC/CTGTGG	20	4	1																																																																								25
ACAGCG/CGCTGT	1																																																																										1
ACAGGC/CCTGTG	1																																																																										1
ACAGTC/ACTGTG	3																																																																										3
ACATAT/ATATGT	13																																																																										13
ACATCC/ATGTGG	5																																																																										5
ACATCT/AGATGT	1																																																																										1
ACATGC/ATGTGC	2																																																																										2
ACATGG/ATGTCC	1																																																																										1
ACCACG/CGTGGT	2																																																																										2
ACCACT/AGTGGT	7	2																																																																									9
ACCAGC/CTGGTG	12	5	2																																																																								19
ACCATC/ATGGTG	14	4	1																																																																								19
ACCATG/ATGGTC	4																																																																										4
ACCCAG/CTGGGT	1																																																																										1
ACCCCC/GGGGGT	5	1																																																																									6
ACCCCT/AGGGGT		1																																																																									1
ACCCGC/CGGGTG	1																																																																										1
ACCCTG/AGGGTC	3																																																																										3
ACCGCC/CGGTGG	38	6	1																																																																								45
ACCGGC/CCGGTG	2																																																																										2
ACCGTC/ACGGTG	1																																																																										1
ACCTAT/AGGTAT	1																																																																										1
ACCTGC/AGGTGC		1																																																																									1
ACGACT/AGTCGT	1																																																																										1
ACGAGC/CGTGCT	1																																																																										1
ACGAGG/CCTCGT	2																																																																										2
ACGATC/ATCGTG	1																																																																										1
ACGATG/ATCGTC	7																																																																										7
ACGCAG/CGTCTG		1																																																																									1
ACGCCC/CGTGGG	4																																																																										4
ACGCCG/CGGCGT	3																																																																										3
ACGCGG/CCGCGT	7																																																																										7
ACGCTG/AGCGTC	3																																																																										3
ACGGCC/CCGTGG	1																																																																										1
ACGGCG/CCGTCG	4	1																																																																									5
ACGGCT/AGCCGT	2																																																																										2
ACGGGG/CCCCGT	1																																																																										1
ACGTCC/ACGTGG	4																																																																										4
ACTAGC/AGTGCT	5	2																																																																									7
ACTAGG/AGTCCT	1																																																																										1
ACTATG/AGTCAT	2																																																																										2
ACTCCG/AGTCGG	1																																																																										1
ACTCCT/AGGAGT		1																																																																									1
ACTCGG/AGTCCG	1																																																																										1
ACTCTC/AGAGTG	1																																																																										1
ACTGAT/AGTATC	1																																																																										1
ACTGCC/AGTGGC	3																																																																										3
ACTGCG/AGTCGC	2																																																																										2
ACTGCT/AGCAGT	16	3																																																																									19
ACTGGC/AGTGCC	3	3																																																																									6
ACTGGG/AGTCCC	1																																																																										1
AGAGAT/ATCTCT	5																																																																										5
AGAGCC/CTCTGG	3	1																																																																									4
AGAGCG/CGCTCT	1																																																																										1
AGAGCT/AGCTCT	7																																																																										7
AGAGGC/CCTCTG	4																																																																										4
AGAGGG/CCCTCT	5	1																																																																									6
AGATAT/ATATCT	1	1																																																																									2
AGATGC/ATCTGC	6																																																																										6
AGATGG/ATCTCC	1	2	1																																																																								4
AGCAGG/CCTGCT	6																																																																										6
AGCATC/ATGCTG	30	5							1																																																																		36
AGCCAT/ATGGCT	2																																																																										2
AGCCCC/CTGGGG	1																																																																										1
AGCCGC/CGGCTG	34	7																																																																									41
AGCCGG/CCGGCT	1																																																																										1
AGCCTC/AGGCTG	15	1																																																																									16
AGCCTG/AGGCTC	2																																																																										2
AGCGCC/CGCTGG	3																																																																										3
AGCGCT/AGCGCT	1																																																																										1
AGCGGC/CCGCTG	34	4			1																																																																						39
AGCGGG/CCCGCT	1																																																																										1
AGCTAT/AGCTAT	2																																																																										2
AGCTCC/AGCTGG	2	2																																																																									4
AGCTGC/AGCTGC	2																																																																										2
AGGATC/ATCCTG	1																																																																										1
AGGATG/ATCCTC	13	1								1																																																																	15
AGGCCC/CCTGGG	2																																																																										2
AGGCCG/CCTCGG	2																																																																										2
AGGCGC/CCTGCG	1	1																																																																									2
AGGCGG/CCGCCT	4	1																																																																									5
AGGGCC/CCCTGG	1																																																																										1
AGGGCG/CCCTCG	1																																																																										1
AGGGGC/CCCCTG		1		1																																																																							2
AGGGGG/CCCCCT	7																																																																										7
ATATCC/ATATGG	3																																																																										3
ATCATG/ATCATG	2	1																																																																									3
ATCCGC/ATGCGG		1																																																																									1
ATCGCC/ATGGCG	1																																																																										1
ATCGGC/ATGCCG	3		1																																																																								4
CCCCCG/CGGGGG	5																																																																										5
CCCCGG/CCGGGG	1																																																																										1
CCCGCG/CGCGGG	1																																																																										1
