Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_045687925.1/fasta/hub_GCA_045687925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              9284
Total size of examined sequences (bp):           67547427
Total number of identified SSRs:                 3629
Number of SSR containing sequences:              2345
Number of sequences containing more than 1 SSR:  725
Number of SSRs present in compound formation:    144


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	1102
3	1036
4	317
5	920
6	252

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2																								2
AC	-	-	-	48	15	11	4	1					1																													80
AG	-	-	-	74	56	29	16	12	4	3	2	2																														198
AT	-	-	-	22	7	4	2		1																																	36
CA	-	-	-	63	24	8	3	3																																		101
CG	-	-	-	10	6																																					16
CT	-	-	-	62	42	25	18	10	8	3	2	5	1	1																												177
GA	-	-	-	64	33	21	7	9	3	2																																139
GC	-	-	-	21		1																																				22
GT	-	-	-	35	17	6	6	3							1																											68
TA	-	-	-	9	7	3																																				19
TC	-	-	-	66	35	23	13	6	6	3		1																														153
TG	-	-	-	54	28	8	1	1	1																																	93
AAC	-	-	3	3	1	1	1																																			9
AAG	-	-	11	3																																						14
AAT	-	-	41	17	13	4				1														1																		77
ACA	-	-	3	3																																						6
ACC	-	-	2	2																																						4
ACG	-	-	4																																							4
ACT	-	-	5	4		2			1			1														1	1															15
AGA	-	-	4	1			1																																			6
AGC	-	-	20	2	1				1																																	24
AGG	-	-	10	1		1																																				12
AGT	-	-	3	3		1											1							1		2																11
ATA	-	-	35	20	9	3	2	1						1		1		1								1				1												75
ATC	-	-	5	1		1																																				7
ATG	-	-	6	1																																						7
ATT	-	-	65	26	12	6	5		5		1				2				1																						1	124
CAA	-	-	6	3	1																																					10
CAC	-	-	4	2	1																																					7
CAG	-	-	22	4	1																																					27
CAT	-	-	7	1																																						8
CCA	-	-	7			1																																				8
CCG	-	-	1	1																																						2
CCT	-	-	5	4																																						9
CGA	-	-	3	1		1																																				5
CGT	-	-	1	1																																						2
CTA	-	-	4		1														1												1											7
CTC	-	-	4	1	1																																					6
CTG	-	-	31	9		1																																				41
CTT	-	-	10	2																																						12
GAA	-	-	9		1																																					10
GAC	-	-	5	1																																						6
GAG	-	-	7																																							7
GAT	-	-	5	2			1																																			8
GCA	-	-	21	6	1																																					28
GCC	-	-	3																																							3
GCT	-	-	10	1	1																																					12
GGA	-	-	5		1		1																																			7
GGC	-	-	2		1																																					3
GGT	-	-	4	1																																						5
GTA	-	-	10	1	1																													1								13
GTC	-	-	5	1																																						6
GTG	-	-	1	2																																						3
GTT	-	-	3																																							3
TAA	-	-	42	21	11	6	1			1	1				1														1													85
TAC	-	-	10	3	1	2							1	1			1	1		1		1									1		1					1	2		1	28
TAG	-	-	9	6	1	1	1						2	1			1	1												2						2						27
TAT	-	-	34	16	5	3	1		1				1			1					1																					63
TCA	-	-	3	3	2																																					8
TCC	-	-	7	3	1																																					11
TCG	-	-	3																																							3
TCT	-	-	8	5		1																1																				15
TGA	-	-	5	1		1																																				7
TGC	-	-	25	10	2		1																																			38
TGG	-	-	2	2	1																																					5
TGT	-	-	13	3																																						16
TTA	-	-	29	8	6	6	1	2	1																	1	1															55
TTC	-	-	11	1	1																																					13
TTG	-	-	4	2	2	1																																				9
AAAC	-	4	2																																							6
AAAG	-	1					1																																			2
AAAT	-	4																																								4
AACA	-	3																																								3
AACG	-	2																																								2
AAGA	-				1																																					1
AAGC	-	3																																								3
AAGG	-		1																																							1
AAGT	-	1																																								1
AATA	-	3	1																																							4
AATC	-	2																																								2
AATG	-	6	3	1																											1											11
AATT	-	6	1																																							7
ACAA	-	1	1																																							2
ACAG	-	1																																								1
ACAT	-			1	1																																					2
AGAA	-	2	1																																							3
AGAC	-	3																																								3
AGAT	-	1																																								1
AGCA	-	2																																								2
AGCC	-	3																																								3
AGCG	-	1																																								1
AGCT	-	1																																								1
AGGC	-	4	1	1																																						6
AGGT	-	1																																								1
AGTG	-	1																																								1
ATAA	-	4																																								4
ATAC	-	3							1																																	4
ATAG	-	1												1																												2
ATCA	-	1																																								1
ATCC	-	1																																								1
ATCG	-	1																																								1
ATCT	-	1	1																																							2
ATGA	-	5																																								5
ATGG	-	1																																								1
ATGT	-	3	1																																							4
ATTA	-	3	2																																							5
ATTC	-	2																	1										1	1												5
ATTT	-	7																																								7
CAAA	-	3	1																																							4
CAAC	-	1																																								1
CAAT	-	1																																								1
CAGA	-	1	1																																							2
CAGC	-	1																																								1
CAGG	-	2	1																																							3
CAGT	-	1	1																																							2
CATA	-	1												1																												2
CATG	-	1																																								1
CATT	-	2																																								2
CCAA	-	1																																								1
CCAC	-	1																																								1
CCAG	-	2																																								2
CCAT	-	1																																								1
CCCA	-	1																																								1
CCTC	-	1																																								1
CCTG	-	1	1																																							2
CCTT	-	1																																								1
CGAC	-	1																																								1
CGCT	-	1																																								1
CGGT	-	2																																								2
CTAG	-	1																																								1
CTAT	-	1																								1																2
CTCA	-	2		1																																						3
CTCC	-		1																																							1
CTCG	-	1																																								1
CTGA	-	1																																								1
CTGC	-	4		1																																						5
CTTT	-	2																																								2
GAAA	-	2	1																																							3
GAAG	-	2																																								2
GAAT	-	1	3	1																																						5
GACC	-	1																																								1
GAGC	-	3																																								3
GAGG	-	2																																								2
GAGT	-	1	1																																							2
GATC	-	1																																								1
GATG	-	1																																								1
GATT	-	2																																								2
GCAA	-	2	1																																							3
GCAG	-	6																												1												7
GCCT	-	2		1																																						3
GCGA	-	2																																								2
GCGG	-	1																																								1
GCTA	-	3																																								3
GCTC	-		1																																							1
GCTG	-	1	1																																							2
GCTT	-	1																																								1
GGAT	-	2																																								2
GGCA	-	1	1																																							2
GGCT	-	1		1																																						2
GGGT	-	1																																								1
GGTT	-			1																																						1
GTAT	-																													1												1
GTCA	-	1																																								1
GTCG	-	1																																								1
GTGA	-	2	1																																							3
GTGG	-	1																																								1
GTTC	-	1																																								1
GTTT	-	5																																								5
TAAA	-	2																																								2
TAAT	-	1																																								1
TACC	-	1																																								1
TAGA	-	3																																								3
TATT	-	3																																								3
TCAC	-		1																																							1
TCAG	-	1	1																																							2
TCAT	-	7	1	2		1																																				11
TCCC	-	1																																								1
TCGA	-	1																																								1
TCGT	-	1																																								1
TCTA	-		1																																							1
TCTG	-	3																																								3
TGAA	-	3	2																																							5
TGAG	-	1																																								1
TGAT	-	3																																								3
TGCA	-	2																																								2
TGCC	-	5																																								5
TGCT	-	3																																								3
TGGC	-	2																																								2
TGGG	-	1																																								1
TTAA	-	3																																								3
TTAC	-	1																																								1
TTAG	-	1																																								1
TTAT	-	6	1																																							7
TTCA	-	3	1																																							4
TTCT	-	2																																								2
TTGA	-	1	1																																							2
TTGG	-	1																																								1
TTGT	-	1																																								1
TTTA	-	5																																								5
TTTC	-	1	1																																							2
TTTG	-	4																																								4
AAAAC	2																																									2
AAAAG	1																																									1
AAAAT	15																																									15
AAACA	1																																									1
AAACT	1																																									1
AAAGA	3																																									3
AAAGT	1																																									1
AAATA	6																																									6
AAATC	1																																									1
AAATG	1																																									1
AAATT	2																																									2
AACAA	1																																									1
AACAC	1																																									1
AACAG	2																																									2
AAGAA	3																																									3
AAGAC	2																																									2
AAGAG	1																																									1
AAGAT	4	3									1													2																		10
AAGCA	1																																									1
AAGTA	1	1																																								2
AATAA	2																																									2
AATAG	2	2									2												2	1																		9
AATAT	2																																									2
AATCA	1																																									1
AATGA	1																																									1
AATTA	2																																									2
AATTC	9	3																																								12
AATTG	8																																									8
AATTT	6																																									6
ACAAG	2																																									2
ACACA	1																																									1
ACAGA	1																																									1
ACAGC	1																																									1
ACATA	2																																									2
ACATG	1																																									1
ACCAG	1																																									1
ACGCC	4																																									4
ACTAG	1																																									1
ACTCA	1																																									1
ACTCG	30	6																																								36
ACTCT	1																																									1
ACTGG	1																																									1
ACTTT	1																																									1
AGAAG	1																																									1
AGAAT	8																				1				1																	10
AGAGA	2	1																																								3
AGATA	5	2									2													1																		10
AGATC	1																																									1
AGATT				1																																						1
AGCAT	1																																									1
AGCCC	4																																									4
AGCGC	1																																									1
AGGAG	1																																									1
AGGAT											1																															1
AGGCG	1																																									1
AGGGG		1																																								1
AGGTG	1																																									1
AGTAG	1																																									1
AGTAT	1					1																																				2
AGTCG	5																																									5
AGTCT	1																																									1
AGTGC	2																																									2
ATAAA	5																																									5
ATAAG	16	6	6																					1																		29
ATAAT	1																																									1
ATACT	1										1																															2
ATAGA	9	5	1						1		1								1					2																		20
ATAGT	3																																									3
ATATA	1																																									1
ATATC	1																																									1
ATCAA	1	1																																								2
ATCAC	1																																									1
ATCAG	1																																									1
ATCAT	4																																									4
ATCCC	1																																									1
ATCTA	2																																									2
ATCTG	1	1																																								2
ATCTT	5	3				1																																				9
ATGAG	1		1																																							2
ATGAT	2																																									2
ATGCA	3	1																																								4
ATTAA	1																																									1
ATTAT	1																																									1
ATTCA	15	4		1					1															1																		22
ATTCG	1																																									1
ATTCT	11	1									2				1					1		1		5																		22
ATTGA	15	2																																								17
ATTGT	1																																									1
ATTTC	3																																									3
ATTTT	18																																									18
CAAAA	2																																									2
CAACC	1																																									1
CAACT	1																																									1
CAATT																							1																			1
CACAG	1																																									1
CACGC		1																																								1
CACTC	1																																									1
CAGAA	1																																									1
CAGAG		1																																								1
CAGCC	1																																									1
CATAT	1																																									1
CATTC	1																																									1
CCAGC			1																																							1
CCAGG	1																																									1
CCAGT	1																																									1
CCATT	1																																									1
CCCAG	1																																									1
CCCCA	1																																									1
CCCCT	1																																									1
CCTAT	1																																									1
CCTCG	1																																									1
CCTGC	1																																									1
CGAAA	1																																									1
CGAAC	1																																									1
CGACA	1																																									1
CGACT	1																																									1
CGAGT	9	4		1																																						14
CGCCT	1																																									1
CGCTA	1																																									1
CGCTG	2																																									2
CGCTT	1																																									1
CGGAG	4																																									4
CGGTA		1																																								1
CGTAC	1																																									1
CTACA	1																																									1
CTAGG	1																																									1
CTATG	1																																									1
CTATT				1		1																																				2
CTCAG	1																																									1
CTCAT	1																																									1
CTCCG	1																																									1
CTCGC	1																																									1
CTCTA	1																																									1
CTCTT	1																																									1
CTGAG	1																																									1
CTGAT	1																																									1
CTGCT	1																																									1
CTGTA	1																																									1
CTGTT	2																																									2
CTTAT	6	1		1										1																												9
CTTCA	1																																									1
CTTGA	1																																									1
CTTTC	1																																									1
CTTTT	2																																									2
GAAAA	9																																									9
GAAGC	1																																									1
GAAGT	1																																									1
GAATA	4	1							1	1	1													1																		9
GAATC	1									1																																2
GAATG	4																																									4
GAATT	4																				1			1																		6
GACAC	1																																									1
GACAG	1																																									1
GACCT	1																																									1
GACTC	1								1																																	2
GAGAA	1																																									1
GAGCA	1																																									1
GAGCT	1																																									1
GATAA	6		1																					1																		8
GATCA	1																																									1
GATCG	1																																									1
GATCT	1																																									1
GATTC			1																																							1
GCACT	1																																									1
GCAGA	1																																									1
GCAGT	3																																									3
GCATC	1																																									1
GCATT	2																																									2
GCCAG	1																																									1
GCCCT	1																																									1
GCCTG	1																																									1
GCGCA	2																																									2
GCGTT	1																																									1
GCTAT	1																																									1
GCTCA	3																																									3
GCTCT	2																																									2
GCTGA	1																																									1
GCTGC	1																																									1
GCTGG	1																																									1
GCTTC	1																																									1
GCTTT	1																																									1
GGAAC	1																																									1
GGACA	2																																									2
GGACG	1																																									1
GGAGC	1																																									1
GGAGG	1																																									1
GGAGT	2																																									2
GGATT	1																																									1
GGCAC	1																																									1
GGCTT	1	1																																								2
GGGCA	1																																									1
GGTTT	1																																									1
GTACA	2																																									2
GTATA	1																																									1
GTCGA	1																																									1
GTCTT	1																																									1
GTGCA	4																																									4
GTTCC	1																																									1
GTTGT			1																																							1
GTTTT	3																																									3
TAAAA	2																																									2
TAAAC	1																																									1
TAAAG	1																																									1
TAAAT	2																																									2
TAAGA	13	8	7												1																											29
TAATA	1																																									1
TAATT	3																																									3
TACAT	2																																									2
TACTG	2																																									2
TACTT	1																																									1
TAGAA	4	2	1																				1	1																		9
TAGGA	1																																									1
TAGTA	4																																									4
TATAA	2																																									2
TATAC	5																																									5
TATAG	2		1																																							3
TATAT	2																																									2
TATCA	1																																									1
TATCT	2	3								1																																6
TATGA	3																																									3
TATTA	4	2																																								6
TATTC	14				1					1														2	2																	20
TATTT	1																																									1
TCAAG	1																																									1
TCAAT	2		1																						1																	4
TCACA	1																																									1
TCACT	1	1																																								2
TCAGT	1																																									1
TCATG		1																																								1
TCATT	2																																									2
TCCCT	1																																									1
TCCTA											1																															1
TCCTC	1																																									1
TCGAC	3																																									3
TCGAG	6		1																																							7
TCGAT	1																																									1
TCGCC	2																																									2
TCTAT	2	1									1												1	3																		8
TCTCT	1																																									1
TCTGA	2																																									2
TCTGC		1																																								1
TCTGT	1																																									1
TCTTA	33	26	8				1																																			68
TCTTG	1																																									1
TCTTT	1																																									1
TGAAC	2																																									2
TGAAT	7	1		1																1	1		1	3																		15
TGACA	1																																									1
TGAGA	1																																									1
TGAGC	1																																									1
TGAGT	2																																									2
TGATC	1																																									1
TGATT	1																																									1
TGCAA	1																																									1
TGCAC	3																																									3
TGCAT	1																																									1
TGCCA	1																																									1
TGCCT	1																																									1
TGCTA	3																																									3
TGCTG	1																																									1
TGGAC	1																																									1
TGGCA	1																																									1
TGGCG	3																																									3
TGGGA	1																																									1
TGTAA	2																																									2
TGTGA	1																																									1
TGTGC	1																																									1
TGTGT	1																																									1
TGTTC	2																																									2
TGTTT	3																																									3
TTAAT	3	1																																								4
TTACA	1																																									1
TTATA	2																																									2
TTATC	6																	1																								7
TTATT	4																																									4
TTCAA	7	1																						1																		9
TTCAT	2																																									2
TTCCA	2																																									2
TTCTA	2																							1	1																	4
TTCTG	1																																									1
TTGAA	2	1																			1																					4
TTGCA	2																																									2
TTGTT	2																																									2
TTTAA	1																																									1
TTTAC	1																																									1
TTTAT	5	1																																								6
TTTCA	3																																									3
TTTCG	2																																									2
TTTGA	3																																									3
TTTGT	2																																									2
TTTTA	6																																									6
TTTTC	10																																									10
TTTTG	5																																									5
AAAATA	1																																									1
AAAATT	2																																									2
AACAAA	1																																									1
AACTAC	1																																									1
AAGTAG																				1																						1
AATATT	7																																									7
AATTAA																				1																						1
AATTAT		1																																								1
AATTCA	1																																									1
AATTCT	1																																									1
ACACGC	1																																									1
ACCAGT	1																																									1
ACTAAT	1																																									1
ACTACC																		1																								1
ACTCTT		1																																								1
ACTGCT																				1																						1
ACTTCA	1																																									1
ACTTCT	1																																									1
AGAAAA	1																																									1
AGAAAG	1																																									1
AGAAGC	1																																									1
AGAGTA	25	1																																								26
AGATTT	1																																									1
AGGTAG	1																																									1
AGTAAA	1																																									1
AGTAGC																				1																						1
ATAAGA									1										1																							2
ATAATT	1																																									1
ATACTG	1																																									1
ATATTA	16	2																																								18
ATCGTG	2																																									2
ATGAAT	1																																									1
ATGGAG	1																																									1
ATTAAA	1																																									1
ATTAAT	3																																									3
ATTATC	1																																									1
ATTCTG		1																																								1
ATTCTT	1																																									1
CACAGG	1																																									1
CAGCAC	1																																									1
CAGCCA	1																																									1
CAGTAG				1																																						1
CATTAA	1																																									1
CCAGCA	1																																									1
CCAGGA																		1																								1
CCCCAG	1																																									1
CCCGGA	1																																									1
CCGGAG	2																																									2
CCTCTG	1																																									1
CGAATT	1																																									1
CGACAA	1																																									1
CGGCTG	1																																									1
CGTCGG	1																																									1
CTAACC	1																																									1
CTAATA	1																																									1
CTATGG	1																																									1
CTCTCA	1																																									1
CTCTCC	1																																									1
CTGGGG	1																																									1
CTGTAC	1																																									1
CTTACT	1																																									1
GAAATC		1																																								1
GAACCA	1																																									1
GAACCC	1																																									1
GAAGTG	1																																									1
GAATTA	1																																									1
GACACC	1																																									1
GAGAAT	1																																									1
GAGACC	1																																									1
GAGCAA	1																																									1
GAGGCG	1																																									1
GAGGGA	1																																									1
GAGTAA	2																																									2
GATCAT	1																																									1
GATGAC	1																																									1
GATGTG	1																																									1
GCGCAG	1																																									1
GCTCCA	2																																									2
GCTCCG	1																																									1
GGAACA	9																																									9
GGACCA	1																																									1
GGAGAC	1																																									1
GGAGCC	1																																									1
GGCATG	1																																									1
GGCTCC	3																																									3
GGGGCA	1																																									1
GGTAGA	1																																									1
GGTCTC	1																																									1
GGTGGA	1																																									1
GGTGGC		1																																								1
GTTGCT	1																																									1
TAAAAA	1																																									1
TAAGAA	2																																									2
TAATAT	1																																									1
TAATTA	1																																									1
TACGGC	1																																									1
TACTAT	1																																									1
TACTCT	10																																									10
TAGTGG	1																																									1
TATAAT	2																																									2
TATATC								1																																		1
TATATT	1																																									1
TATTAA	5	1																																								6
TCCGAG	1						1																																			2
TCTAAT					1																																					1
TCTTGT	1																																									1
TGACAG	1																																									1
TGACTC	1																																									1
TGAGTA	1																																									1
TGGACA	1																																									1
TGGCCG	1																																									1
TGGTAG																		1																								1
TGTGGA	1																																									1
TGTTCC	13	1																																								14
TGTTTT	1																																									1
TTAAAT	1																																									1
TTAATA	8																																									8
TTACTC	18																																									18
TTACTT	1																																									1
TTCATA	1																																									1
TTCGTC	1																																									1
TTCTCC		1																																								1
TTCTTA	2																																									2
TTGCCG	4																																									4
TTGCGA	1																																									1
TTGTTC	1																																									1
TTTCTA	1																																									1
TTTTAC	1																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2																								2
AC/GT	-	-	-	200	84	33	14	8	1				1		1																											342
AG/CT	-	-	-	266	166	98	54	37	21	11	4	8	1	1																												667
AT/AT	-	-	-	31	14	7	2		1																																	55
CG/CG	-	-	-	31	6	1																																				38
AAC/GTT	-	-	32	14	4	2	1																																			53
AAG/CTT	-	-	53	12	2	1	1															1																				70
AAT/ATT	-	-	246	108	56	28	10	3	7	2	2		1	1	3	2		1	1		1			1		2	1		1	1											1	479
ACC/GGT	-	-	20	9	2	1																																				32
ACG/CGT	-	-	21	4		1																																				26
ACT/AGT	-	-	41	17	4	6	1		1			1	3	2			3	2	1	1		1		1		3	1			2	2		1	1		2		1	2		1	101
AGC/CTG	-	-	129	32	6	1	1		1																																	170
AGG/CCT	-	-	38	9	3	1	1																																			52
ATC/ATG	-	-	31	9	2	2	1																																			45
CCG/CGG	-	-	6	1	1																																					8
AAAC/GTTT	-	21	4																																							25
AAAG/CTTT	-	10	3		1		1																																			15
AAAT/ATTT	-	34	2																																							36
AACC/GGTT	-	3		1																																						4
AACG/CGTT	-	4																																								4
AACT/AGTT	-	1																																								1
AAGC/CTTG	-	11	1																																							12
AAGG/CCTT	-	3	1																																							4
AAGT/ACTT	-	2																																								2
AATC/ATTG	-	10	1																																							11
AATG/ATTC	-	29	10	4		1													1										1	1	1											48
AATT/AATT	-	13	3																																							16
ACAG/CTGT	-	8	1																																							9
ACAT/ATGT	-	7	1	1	1				1					1																1												13
ACCC/GGGT	-	5																																								5
ACCG/CGGT	-	5																																								5
ACCT/AGGT	-	2																																								2
ACTC/AGTG	-	7	3	1																																						11
ACTG/AGTC	-	4	2																																							6
AGAT/ATCT	-	7	2											1												1																11
AGCC/CTGG	-	10	1	1																																						12
AGCG/CGCT	-	8	1																																							9
AGCT/AGCT	-	5																																								5
AGGC/CCTG	-	25	4	3																										1												33
AGGG/CCCT	-	4	1																																							5
ATCC/ATGG	-	6																																								6
ATCG/ATCG	-	3																																								3
ATGC/ATGC	-	3																																								3
CCCG/CGGG	-	1																																								1
AAAAC/GTTTT	21																																									21
AAAAG/CTTTT	29																																									29
AAAAT/ATTTT	64	1																																								65
AAACC/GGTTT	1																																									1
AAACG/CGTTT	3																																									3
AAACT/AGTTT	2																																									2
AAAGC/CTTTG	2																																									2
AAAGG/CCTTT	1																																									1
AAAGT/ACTTT	6	1																																								7
AAATC/ATTTG	7	1																																								8
AAATG/ATTTC	12																																									12
AAATT/AATTT	20	1																																								21
AACAC/GTGTT	3		1																																							4
AACAG/CTGTT	10																																									10
AACAT/ATGTT	2																																									2
AACCC/GGGTT	1																																									1
AACCG/CGGTT	1																																									1
AACGC/CGTTG	1																																									1
AACGG/CCGTT	2																																									2
AACTC/AGTTG	4																																									4
AACTG/AGTTC	3																																									3
AAGAC/CTTGT	6																																									6
AAGAG/CTCTT	7	1																																								8
AAGAT/ATCTT	96	52	22	1		1	1			1	3			1	1			1						5																		185
AAGCC/CTTGG	1	1																																								2
AAGCG/CGCTT	3																																									3
AAGGC/CCTTG	1																																									1
AAGGG/CCCTT	1																																									1
AAGTC/ACTTG	2																																									2
AAGTG/ACTTC	3	1																																								4
AATAC/ATTGT	1																																									1
AATAG/ATTCT	56	12	2	1	1	1			2	2	7				1				1	1	1	1	4	16	4																	113
AATAT/ATATT	16	2																																								18
AATCC/ATTGG	1																																									1
AATCG/ATTCG	3		1							1																																5
AATCT/AGATT	2			1																																						3
AATGC/ATTGC	9	1																																								10
AATGG/ATTCC	8																																									8
AATGT/ACATT	5																																									5
AATTC/AATTG	69	12	1	2					1											1	3		2	6	1																	98
ACACG/CGTGT	2																																									2
ACACT/AGTGT	1																																									1
ACAGC/CTGTG	4																																									4
ACAGG/CCTGT	3																																									3
ACAGT/ACTGT	5																																									5
ACATC/ATGTG	3																																									3
ACATG/ATGTC	2	1																																								3
ACCAG/CTGGT	1																																									1
ACCCC/GGGGT	1																																									1
ACCGT/ACGGT	1	1																																								2
ACCTC/AGGTG	1																																									1
ACCTG/AGGTC	1																																									1
ACGCC/CGTGG	7	1																																								8
ACGCT/AGCGT	1																																									1
ACGGC/CCGTG	1																																									1
ACGGG/CCCGT	1																																									1
ACTAG/AGTCT	2																																									2
ACTAT/AGTAT	17		1			1					1																															20
ACTCC/AGTGG	3																																									3
ACTCG/AGTCG	56	10	1	1					1																																	69
ACTCT/AGAGT	3																																									3
ACTGC/AGTGC	13																																									13
ACTGG/AGTCC	3																																									3
AGAGC/CTCTG	5	2																																								7
AGAGG/CCTCT	2																																									2
AGATC/ATCTG	9	1																																								10
AGATG/ATCTC	3		1																																							4
AGCAT/ATGCT	6																																									6
AGCCC/CTGGG	7		1																																							8
AGCCT/AGGCT	1																																									1
AGCGC/CGCTG	6																																									6
AGCGG/CCGCT	6																																									6
AGCTC/AGCTG	8																																									8
AGGAT/ATCCT	2										2																															4
AGGCC/CCTGG	3																																									3
AGGCG/CCTCG	6																																									6
AGGGC/CCCTG	3																																									3
AGGGG/CCCCT	2	1																																								3
ATATC/ATATG	12																																									12
ATCCC/ATGGG	2																																									2
ATCCG/ATCGG	1																																									1
ATCGC/ATGCG	1																																									1
ATGCC/ATGGC	2																																									2
AAAAAC/GTTTTT	2																																									2
AAAAAG/CTTTTT	1																																									1
AAAAAT/ATTTTT	2																																									2
AAAAGT/ACTTTT	3																																									3
AAAATT/AATTTT	3																			1																						4
AAAGAG/CTCTTT	1																																									1
AAATAG/ATTTCT	1																																									1
AAATAT/ATATTT	1																																									1
AAATCG/ATTTCG		1																																								1
AAATCT/AGATTT	1																																									1
AAATTC/AATTTG	1																																									1
AAATTT/AAATTT	1																																									1
AACAAG/CTTGTT	2																																									2
AACAGC/CTGTTG	1																																									1
AACAGG/CCTGTT	22	1																																								23
AACATT/AATGTT	1																																									1
AACCAG/CTGGTT	1																																									1
AACCCG/CGGGTT	1																																									1
AACCCT/AGGGTT	1																																									1
AACGAC/CGTTGT	1																																									1
AACGGC/CCGTTG	4																																									4
AACTAC/AGTTGT	1																																									1
AACTTC/AAGTTG	1																																									1
AAGAAT/ATTCTT	5								1										1																							7
AAGACG/CGTCTT	1																																									1
AAGAGC/CTCTTG	1																																									1
AAGAGT/ACTCTT	56	2																																								58
AAGCAG/CTGCTT	1																																									1
AAGGAG/CCTTCT		1																																								1
AAGTAG/ACTTCT	1																			1																						2
AAGTGG/ACTTCC	1																																									1
AATACT/AGTATT	2																																									2
AATAGT/ACTATT	1																																									1
AATATG/ATATTC	2																																									2
AATATT/AATATT	40	3																																								43
AATCAG/ATTCTG		1																																								1
AATCGC/ATTGCG	1																																									1
AATGAG/ATTCTC	1																																									1
AATGAT/ATCATT	1																																									1
AATTAG/AATTCT	2				1																																					3
AATTAT/AATTAT	4	1																																								5
AATTCG/AATTCG	1																																									1
ACACCG/CGGTGT	1																																									1
ACACGC/CGTGTG	1																																									1
ACAGCC/CTGTGG	1																																									1
ACAGGC/CCTGTG	1																																									1
ACAGGT/ACCTGT	1																																									1
ACAGTG/ACTGTC	1																																									1
ACATCC/ATGTGG	2																																									2
ACATGG/ATGTCC	1																																									1
ACCACT/AGTGGT	1																	2																								3
ACCAGC/CTGGTG	2																																									2
ACCAGG/CCTGGT	1																	1																								2
ACCAGT/ACTGGT	1																																									1
ACCCGG/CCGGGT	1																																									1
ACCGAG/CGGTCT	2																																									2
ACCGCC/CGGTGG		1																																								1
ACCTCC/AGGTGG	1																																									1
ACCTCT/AGAGGT	2																																									2
ACGATC/ATCGTG	2																																									2
ACGATG/ATCGTC	1																																									1
ACGCCG/CGGCGT	1																																									1
ACGGAG/CCGTCT	1																																									1
ACGGCC/CCGTGG	1																																									1
ACGGCT/AGCCGT	1																																									1
ACTCAT/AGTATG	1																																									1
ACTCGG/AGTCCG	1						1																																			2
ACTCTC/AGAGTG	1																																									1
ACTCTG/AGAGTC	1																																									1
ACTGAT/AGTATC	1																																									1
ACTGCT/AGCAGT				1																2																						3
AGAGGC/CCTCTG	1																																									1
AGAGGG/CCCTCT	2																																									2
AGATAT/ATATCT								1																																		1
AGATGG/ATCTCC	1																																									1
AGCCAT/ATGGCT	1																																									1
AGCCCC/CTGGGG	2																																									2
AGCCGC/CGGCTG	1																																									1
AGCCGG/CCGGCT	7																																									7
AGCTCC/AGCTGG	2																																									2
AGGCGC/CCTGCG	1																																									1
AGGCGG/CCGCCT	1																																									1
AGGGGC/CCCCTG	1																																									1
ATCATG/ATCATG	1																																									1
ATGCCC/ATGGGC	1																																									1
