Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_045269395.1/fasta/hub_GCA_045269395.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              61
Total size of examined sequences (bp):           21067390
Total number of identified SSRs:                 728
Number of SSR containing sequences:              38
Number of sequences containing more than 1 SSR:  25
Number of SSRs present in compound formation:    46


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	430
3	69
4	35
5	55
6	138

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										1																1
AC	-	-	-	5	2																																						7
AG	-	-	-	3		1	3	1	1	1		1																															11
AT	-	-	-	15	12	12	14	25	16	16	21	12	9	16	12	9	6	5	1	2	1			1																			205
CA	-	-	-	3		2																																					5
CT	-	-	-		1				1																																		2
GA	-	-	-	3	1																																						4
GT	-	-	-	8		1																																					9
TA	-	-	-	21	10	15	17	10	16	11	11	6	10	5	6	7	11	7	3			2	1		2																		171
TC	-	-	-	5				2	1																																		8
TG	-	-	-	6	2																																						8
AAG	-	-	1																																								1
AAT	-	-	1																																								1
ACA	-	-	3																																								3
ACG	-	-	3																																								3
AGA	-	-	2																																								2
AGT	-	-	1			1																																					2
ATA	-	-		2	1																																						3
ATC	-	-		2																																							2
ATG	-	-	1																																								1
CAA	-	-					2																																				2
CCA	-	-	2																																								2
CTA	-	-		2																																							2
CTC	-	-	3																																								3
CTG	-	-		1																																							1
CTT	-	-	1		1																																						2
GAA	-	-	3		1																																						4
GAC	-	-		1																																							1
GAG	-	-	1																																								1
GAT	-	-	3																																								3
GCC	-	-		2																																							2
GGC	-	-		1		1																																					2
TCA	-	-	3	3																																							6
TCG	-	-	2				1																																				3
TCT	-	-	2																																								2
TGA	-	-	2					1																																			3
TGC	-	-	1	1																																							2
TGT	-	-					1																																				1
TTA	-	-	5	1																																							6
TTC	-	-		1																																							1
TTG	-	-	2																																								2
ACCC	-				1																																						1
ATAC	-	1																																									1
ATCT	-	1		1																																							2
ATGA	-	7																																									7
ATGT	-	2	1								1																																4
CACC	-	1																																									1
CCAC	-		3																																								3
CCCA	-	2																																									2
GATA	-					1																																					1
GTGA	-	3																																									3
TATG	-	2																																									2
TCAT	-	6																																									6
TCTT	-	1																																									1
TTTC	-				1																																						1
AAACA	1																																										1
AAATG		1																																									1
AAGGC	1																																										1
AATGG	1																																										1
ATAGC	6	1																																									7
ATAGT		1																																									1
ATGCA	1																																										1
CACAG	1																																										1
CACTC	1																																										1
CAGAA	1																																										1
CATAG	6																																										6
CCACC	1	2																																									3
CCATG		2																																									2
CCCAC	2		1																																								3
CTGTG					1																																						1
GAGTA	1																																										1
GCATA	1																																										1
GCTAT	1																																										1
GGCAT		1																																									1
GTACA	1																																										1
GTGAT	1																																										1
GTGTA	1																																										1
TAGCA	5																																										5
TGCTA	7																																										7
TGTTA	1																																										1
TTATA		1																																									1
TTCTC	2																																										2
TTTCA	1																																										1
AACCCT	1																																										1
AAGATG	1																																										1
ACCAGG	3																																										3
ACGATG	1																																										1
ACGCTA		1																																									1
ACTCCC	2																																										2
AGAAGC	1																																										1
AGACGA	1																																										1
AGATAT	1																																										1
AGCCTC	5																																										5
AGGAGC	1																																										1
AGGCTC	1																																										1
AGTGGA	1																																										1
ATAAGT	2																																										2
ATACAC	1																																										1
ATAGAG	1																																										1
ATATAC	1																																										1
ATATCT	1																																										1
ATTGTG	2																																										2
CAACAG	1																																										1
CAACGG	3																																										3
CACAAG		1																																									1
CACCTT	1																																										1
CAGAAG	1																																										1
CAGGAC	1																																										1
CATGCC	1																																										1
CCCAGC	1																																										1
CCCTAA																																										1	1
CCTAAA	1																																										1
CCTGGT	4																																										4
CGAGGA	1																																										1
CGTCTT	1																																										1
CTACTC	2																																										2
CTCCAT	1																																										1
CTCCGC		1	2																																								3
CTCCTA	2																																										2
CTGAGC	2																																										2
CTGTTG	2																																										2
CTTATC		2																																									2
GAAGAG	1																																										1
GACGAA		1																																									1
GAGGCT	3																																										3
GATGAC	2																																										2
GATTGT	1																																										1
GCAACC	2																																										2
GCATCA	2																																										2
GCGACT	1																																										1
GCGATA		1	1																																								2
GCGGTT	1																																										1
GCGTTA	2																																										2
GCTGGT				1																																							1
GGAGCA			1																																								1
GGAGCC		1																																									1
GGAGCG		1																																									1
GGAGTA	7																																										7
GGAGTG		2	3																																								5
GGCTGT		1																																									1
GGGCAC	1																																										1
GGTTTA	1	1																																									2
GTCATC	1		1																																								2
GTGGGA	6																																										6
GTTATT	1																																										1
TACTCC	3																																										3
TATGTA	1																																										1
TATGTG	1																																										1
TCATCG	1																																										1
TCATGG		1																																									1
TCCCAC		8	3																																								11
TCGCTA			1																																								1
TCGTCT				1																																							1
TCTTCA	1																																										1
TGAAGA	1																																										1
TGCATT	1																																										1
TGCGGT	1																																										1
TGGTGC	3																																										3
TTATTC	1																																										1
TTCTTT	1																																										1
TTGTCA	1																																										1
TTTAGG	1																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										1																1
AC/GT	-	-	-	22	4	3																																					29
AG/CT	-	-	-	11	2	1	3	3	3	1		1																															25
AT/AT	-	-	-	36	22	27	31	35	32	27	32	18	19	21	18	16	17	12	4	2	1	2	1	1	2																		376
AAC/GTT	-	-	5				3																																				8
AAG/CTT	-	-	9	1	2																																						12
AAT/ATT	-	-	6	3	1																																						10
ACC/GGT	-	-	2																																								2
ACG/CGT	-	-	5	1			1																																				7
ACT/AGT	-	-	1	2		1																																					4
AGC/CTG	-	-	1	2																																							3
AGG/CCT	-	-	4																																								4
ATC/ATG	-	-	9	5				1																																			15
CCG/CGG	-	-		3		1																																					4
AAAG/CTTT	-	1			1																																						2
AATG/ATTC	-	13																																									13
ACAT/ATGT	-	5	1								1																																7
ACCC/GGGT	-	3	3		1																																						7
ACTC/AGTG	-	3																																									3
AGAT/ATCT	-	1		1		1																																					3
AAAAC/GTTTT	1																																										1
AAATG/ATTTC	1	1																																									2
AACAG/CTGTT	1																																										1
AACAT/ATGTT	1																																										1
AAGAG/CTCTT	2																																										2
AAGGC/CCTTG	1																																										1
AATAT/ATATT		1																																									1
AATGC/ATTGC	1																																										1
AATGG/ATTCC	1																																										1
ACACT/AGTGT	1																																										1
ACAGC/CTGTG	1				1																																						2
ACAGT/ACTGT	1																																										1
ACATC/ATGTG	1																																										1
ACCCC/GGGGT	3	2	1																																								6
ACTAT/AGTAT		1																																									1
ACTCC/AGTGG	1																																										1
ACTCT/AGAGT	1																																										1
AGCAT/ATGCT	26	1																																									27
ATGCC/ATGGC		3																																									3
AAAAAG/CTTTTT	1																																										1
AAACCT/AGGTTT	3	1																																									4
AAATGC/ATTTGC	1																																										1
AACAAT/ATTGTT	1																																										1
AACAGC/CTGTTG	3																																										3
AACCCT/AGGGTT	1																																									1	2
AACCGC/CGGTTG	4																																										4
AACGCT/AGCGTT	2	1																																									3
AACGGC/CCGTTG	3																																										3
AAGAAT/ATTCTT	1																																										1
AAGACG/CGTCTT	2	1		1																																							4
AAGAGG/CCTCTT	1																																										1
AAGATG/ATCTTC	3																																										3
AAGCAC/CTTGTG		1																																									1
AAGCAG/CTGCTT	2																																										2
AAGGAT/ATCCTT		2																																									2
AAGGTG/ACCTTC	1																																										1
AAGTAT/ACTTAT	2																																										2
AAGTGG/ACTTCC	1																																										1
AATCAC/ATTGTG	3																																										3
AATGAC/ATTGTC	1																																										1
ACACAT/ATGTGT	2																																										2
ACAGCC/CTGTGG		1																																									1
ACATAT/ATATGT	2																																										2
ACCAGC/CTGGTG	3			1																																							4
ACCAGG/CCTGGT	8																																										8
ACCATG/ATGGTC		1																																									1
ACGAGG/CCTCGT	1																																										1
ACGATG/ATCGTC	5		1																																								6
ACGGGC/CCCGTG	1																																										1
ACTCCC/AGTGGG	8	10	6																																								24
ACTCCT/AGGAGT	14																																										14
ACTGCG/AGTCGC	1																																										1
AGAGAT/ATCTCT	1																																										1
AGATAT/ATATCT	2																																										2
AGATGG/ATCTCC	1																																										1
AGCAGG/CCTGCT	1		1																																								2
AGCATC/ATGCTG	2																																										2
AGCCCC/CTGGGG	1																																										1
AGCCGG/CCGGCT		1																																									1
AGCCTC/AGGCTG	8																																										8
AGCCTG/AGGCTC	3																																										3
AGCGAT/ATCGCT		1	2																																								3
AGCGGG/CCCGCT		1																																									1
AGGCGG/CCGCCT		1	2																																								3
ATGCCC/ATGGGC	1																																										1
