Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-37/megassr/results/hub_GCA_044930405.1/fasta/hub_GCA_044930405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              82
Total size of examined sequences (bp):           6428090
Total number of identified SSRs:                 41
Number of SSR containing sequences:              27
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	7
5	10
6	22

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	1								1
GC	-	-	-	1								1
CAC	-	-	1									1
CCG	-	-	1									1
CGG	-	-	2									2
GCG	-	-	2									2
GGT	-	-	1									1
CCACC	1											1
CGCCG	3											3
CGCGC	1											1
CGGCG	1											1
CTCGC	1											1
GCGCC	1											1
GCGGC	2											2
AGCGCC		1										1
ATCGTG		1										1
CCAGCG	1											1
CCAGGG	1											1
CCCTGG	1											1
CCGAGC					1							1
CCGAGG	1											1
CCTGAC	1											1
CCTGGG	2											2
CGCCCT	1											1
CGCTGG	1											1
CGCTGT	1											1
CGGCGC	1											1
GCAGGC	1											1
GCGCCG	1											1
GCGCCT	1											1
GGCCAT	1											1
GGCCTT	1											1
GTCACG			1									1
GTTGGC											1	1
TGTTCC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	2								2
ACC/GGT	-	-	2									2
CCG/CGG	-	-	5									5
ACCCC/GGGGT	1											1
AGGCG/CCTCG	1											1
CCGCG/CGCGG	8											8
AACAGG/CCTGTT	1											1
AACGCC/CGTTGG											1	1
AAGGCC/CCTTGG	1											1
ACAGCG/CGCTGT	1											1
ACCCTG/AGGGTC	1											1
ACCGTG/ACGGTC			1									1
ACGATC/ATCGTG		1										1
AGCCCG/CGGGCT					1							1
AGCGCC/CGCTGG	2	1										3
AGGCCC/CCTGGG	2											2
AGGCCG/CCTCGG	1											1
AGGCGC/CCTGCG	2											2
AGGGCC/CCCTGG	2											2
AGGGCG/CCCTCG	1											1
ATGGCC/ATGGCC	1											1
CCGGCG/CCGGCG	2											2
