Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-34/megassr/results/hub_GCA_044930345.1/fasta/hub_GCA_044930345.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              92
Total size of examined sequences (bp):           6604144
Total number of identified SSRs:                 57
Number of SSR containing sequences:              31
Number of sequences containing more than 1 SSR:  15
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	6
5	13
6	33

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-		1					1
GC	-	-	-	3	1					4
CAC	-	-	1							1
CGC	-	-	1							1
CGG	-	-	2							2
GCG	-	-	1							1
GGT	-	-	1							1
ATTGG	1									1
CCTGG	1									1
CGCCG	3									3
CGCGC	1									1
CGCGG	1									1
CGGCG	1									1
CTCGC	1									1
GCGCC	2									2
GCGGC	1									1
GGCGC	1									1
ACAGCG	1									1
ACCACG	1									1
AGCCCG	1									1
AGGGCG		1								1
CAACGA	1									1
CAGCGC	1									1
CAGGAA	1									1
CCAGCA		1								1
CCAGCG	1									1
CCAGGG	1									1
CCGAGC					1					1
CCGAGG	1									1
CCGTGA		1								1
CCTGAC	1									1
CCTGGG	2									2
CGCCAC	1									1
CGCCGA	1									1
CGCCGG	2									2
CGCTGG	1									1
CGTGAT									1	1
GAACAT			1							1
GGCATG	1									1
GGCCAT	1									1
GGCCTT	1									1
GGCGCG	1									1
GGCGCT	1									1
GGCTCG					1					1
GGTGAT	1									1
GTTGGC			1							1
TGGCTG								1		1
TGTTCG				1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	3	2					5
ACC/GGT	-	-	2							2
CCG/CGG	-	-	4							4
AATCC/ATTGG	1									1
AGGCC/CCTGG	1									1
AGGCG/CCTCG	1									1
CCGCG/CGCGG	10									10
AACACG/CGTGTT				1						1
AACAGG/CCTGTT	1									1
AACATG/ATGTTC			1							1
AACGAC/CGTTGT	1									1
AACGCC/CGTTGG			1							1
AAGGCC/CCTTGG	1									1
ACAGCC/CTGTGG								1		1
ACAGCG/CGCTGT	1									1
ACCACG/CGTGGT	1									1
ACCAGC/CTGGTG		1								1
ACCATC/ATGGTG	1									1
ACCCTG/AGGGTC	1									1
ACCGCC/CGGTGG	1									1
ACCGTG/ACGGTC		1								1
ACGATC/ATCGTG									1	1
ACGCCG/CGGCGT	1									1
AGCCCG/CGGGCT	1				2					3
AGCGCC/CGCTGG	4									4
AGGCCC/CCTGGG	2									2
AGGCCG/CCTCGG	1									1
AGGGCC/CCCTGG	1									1
AGGGCG/CCCTCG		1								1
ATGCCC/ATGGGC	1									1
ATGGCC/ATGGCC	1									1
CCCGCG/CGCGGG	1									1
CCGGCG/CCGGCG	2									2
