Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-71/megassr/results/hub_GCA_044930325.1/fasta/hub_GCA_044930325.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              118
Total size of examined sequences (bp):           6575285
Total number of identified SSRs:                 48
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  15
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	10
5	10
6	26

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
GC	-	-	-	2									2
CAC	-	-	1					1					2
CCG	-	-	2										2
CGG	-	-	1										1
GCC	-	-	1										1
GCG	-	-	2										2
GGC	-	-		1									1
GGT	-	-	1										1
CCTGC	1												1
CGCCG	3												3
CGCGC	1												1
CGGCG	1												1
CTCGC	1												1
GCGGC	2												2
GGCGC	1												1
CACGAA			1										1
CAGGAA	1												1
CCAGCA		1											1
CCAGCG	2												2
CCAGGG	1												1
CCGAGC		1											1
CCGAGG	1												1
CCTGAC	1												1
CCTGGC	1												1
CCTGGG	1												1
CGCCCT	1												1
CGCCGA				1									1
CGCGGG	1												1
CGCTGG	1												1
CGCTGT	1												1
CGTCGG			1										1
CGTGAT			1										1
CTCCAG	1												1
GCAGGC	1												1
GCGCCG	2												2
GGCCAT	1												1
GGCCTT	1												1
GGCTCG									1				1
GTTGGC												1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	2									2
ACC/GGT	-	-	2					1					3
CCG/CGG	-	-	6	1									7
AGGCG/CCTCG	1												1
AGGGC/CCCTG	1												1
CCGCG/CGCGG	8												8
AACACG/CGTGTT			1										1
AACAGG/CCTGTT	1												1
AACGCC/CGTTGG												1	1
AAGGCC/CCTTGG	1												1
ACAGCG/CGCTGT	1												1
ACCAGC/CTGGTG		1											1
ACCCTG/AGGGTC	1												1
ACGATC/ATCGTG			1										1
ACGCCG/CGGCGT			1	1									2
AGCCCG/CGGGCT		1							1				2
AGCGCC/CGCTGG	3												3
AGCTCC/AGCTGG	1												1
AGGCCC/CCTGGG	1												1
AGGCCG/CCTCGG	1												1
AGGCGC/CCTGCG	1												1
AGGGCC/CCCTGG	2												2
AGGGCG/CCCTCG	1												1
ATGGCC/ATGGCC	1												1
CCCGCG/CGCGGG	1												1
CCGGCG/CCGGCG	2												2
