Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-70/megassr/results/hub_GCA_044930305.1/fasta/hub_GCA_044930305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              122
Total size of examined sequences (bp):           6997836
Total number of identified SSRs:                 55
Number of SSR containing sequences:              31
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	10
4	1
5	9
6	31

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	1									1
GC	-	-	-	3									3
CAC	-	-	1										1
CCG	-	-	1										1
CGG	-	-	2										2
GCC	-	-	2										2
GCG	-	-	2										2
GGC	-	-	1										1
GTC	-	-	1										1
GCAT	-	1											1
CGCCG	3												3
CGCGC	1												1
CGGCG	1												1
GCGGC	1												1
GGCAG	1												1
GGCGA	1												1
GGCGC	1												1
AAGGCC			1										1
ACAGCC												1	1
ACAGCG	1												1
ATCACG				1									1
ATGGCC	1												1
CAGGAA	1												1
CCAGCA		1											1
CCAGCG	1												1
CCAGGG	2												2
CCGAGC								1					1
CCGAGG	1												1
CCGCGC	1												1
CCGTGA		1											1
CCTGAC	1												1
CCTGGG	1												1
CGCCAC	1												1
CGCCAG	1												1
CGCCCT	1												1
CGCCGA		1											1
CGCCGG	2												2
CGGCAT	1												1
GAACAC		1											1
GCGCCT	1												1
GCGCTG	1												1
GGCCTT	1												1
GGCTCG								1					1
GGTGGC	1												1
GTTGGC			1										1
TCGGCG			1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	4									4
ACC/GGT	-	-	1										1
ACG/CGT	-	-	1										1
CCG/CGG	-	-	8										8
ATGC/ATGC	-	1											1
AGGCG/CCTCG	1												1
AGGGC/CCCTG	1												1
CCGCG/CGCGG	7												7
AACACG/CGTGTT		1											1
AACAGG/CCTGTT	1												1
AACGCC/CGTTGG			1										1
AAGGCC/CCTTGG	1		1										2
ACAGCC/CTGTGG												1	1
ACAGCG/CGCTGT	1												1
ACCAGC/CTGGTG		1											1
ACCCTG/AGGGTC	1												1
ACCGCC/CGGTGG	2												2
ACCGTG/ACGGTC		1											1
ACGATC/ATCGTG				1									1
ACGCCG/CGGCGT		1	1										2
AGCCCG/CGGGCT								2					2
AGCGCC/CGCTGG	3												3
AGGCCC/CCTGGG	1												1
AGGCCG/CCTCGG	1												1
AGGCGC/CCTGCG	1												1
AGGGCC/CCCTGG	2												2
AGGGCG/CCCTCG	1												1
ATCGGC/ATGCCG	1												1
ATGGCC/ATGGCC	1												1
CCCGCG/CGCGGG	1												1
CCGGCG/CCGGCG	2												2
