Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-51/megassr/results/hub_GCA_044357025.1/fasta/hub_GCA_044357025.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           4619542
Total number of identified SSRs:                 19
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	5
4	1
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	3				3
GC	-	-	-	2				2
CGG	-	-	1					1
GCA	-	-			1			1
GCC	-	-	1					1
GCG	-	-	1					1
GCT	-	-	1					1
GCCA	-	1						1
CGCGC	1							1
GCGCC	1							1
GCGCG	1							1
CTGGCG	1							1
GAAGTC	1							1
GCACCG	1							1
GCCAGC	1							1
TGGTCG							1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	5				5
AGC/CTG	-	-	1		1			2
CCG/CGG	-	-	3					3
AGCC/CTGG	-	1						1
CCGCG/CGCGG	3							3
AAGTCG/ACTTCG	1							1
ACCACG/CGTGGT							1	1
ACCGGC/CCGGTG	1							1
AGCGCC/CGCTGG	2							2
