Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-50/megassr/results/hub_GCA_044321405.1/fasta/hub_GCA_044321405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              82
Total size of examined sequences (bp):           5350798
Total number of identified SSRs:                 42
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	18
5	4
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	5	2	7
GC	-	-	-	2		2
CCG	-	-	1			1
CGA	-	-	1			1
CGC	-	-	1	2		3
CGG	-	-	2			2
CTG	-	-	3			3
GCA	-	-	1	1		2
GCC	-	-	1			1
GCT	-	-		1		1
GGC	-	-	3			3
TCG	-	-	1			1
CGCGC	1					1
CGCGG	1					1
GGCGC	1					1
TCAAG	1					1
AATGGC	1					1
AGCGGG		1				1
CAGCGC	1					1
GAAGTC	1					1
GACGAA	1					1
GCCTGG	1					1
GCGCCA	1					1
GCTCCG		1				1
GGCGCC	1					1
GTGGAA	1					1
TTGACC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	7	2	9
ACG/CGT	-	-	2			2
AGC/CTG	-	-	4	2		6
CCG/CGG	-	-	8	2		10
AAGTC/ACTTG	1					1
CCGCG/CGCGG	3					3
AAGACG/CGTCTT	1					1
AAGGTC/ACCTTG	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
AATGGC/ATTGCC	1					1
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	2					2
AGCGGG/CCCGCT		1				1
AGGCCC/CCTGGG	1					1
CCGGCG/CCGGCG	1					1
