Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-38/megassr/results/hub_GCA_044069305.1/fasta/hub_GCA_044069305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           5427021
Total number of identified SSRs:                 43
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	18
5	6
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	3	1		4
CAG	-	-	1				1
CCA	-	-	1				1
CCG	-	-	3				3
CGC	-	-	1	2			3
CGG	-	-	1				1
CTG	-	-	2				2
GAC	-	-	1				1
GCA	-	-	1				1
GCC	-	-	2	1			3
GGC	-	-	1				1
TGC	-	-				1	1
AATAA	1						1
CCACG	1						1
CCCGG	1						1
CCGCG	1						1
GGCGC	1						1
TTTAT	1						1
CGGTAT	1						1
CTGGTG	1						1
GAAGTC	1						1
GAGTCG	4						4
GCGCTG	1						1
GCTCCG		1					1
GGGGCT	1						1
GTCGGA	1						1
GTGGAA	1						1
TCACGA	1						1
TCGGAG	1						1
TCTTCG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	3	1		4
ACC/GGT	-	-	1				1
ACG/CGT	-	-	1				1
AGC/CTG	-	-	4			1	5
CCG/CGG	-	-	8	3			11
AAAAT/ATTTT	2						2
ACGCC/CGTGG	1						1
CCCGG/CCGGG	1						1
CCGCG/CGCGG	2						2
AAGACG/CGTCTT	1						1
AAGTCG/ACTTCG	1						1
AAGTGG/ACTTCC	1						1
ACCAGC/CTGGTG	1						1
ACCGAT/ATCGGT	1						1
ACGATC/ATCGTG	1						1
ACTCCG/AGTCGG	6						6
AGCCCC/CTGGGG	1						1
AGCCGG/CCGGCT		1					1
AGCGCC/CGCTGG	1						1
