Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-36/megassr/results/hub_GCA_044040015.1/fasta/hub_GCA_044040015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              478
Total size of examined sequences (bp):           5653960
Total number of identified SSRs:                 35
Number of SSR containing sequences:              31
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	10
4	1
5	8
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	4	1	5
CT	-	-	-	1		1
GC	-	-	-	1		1
CCA	-	-	1			1
CCG	-	-	3			3
CTG	-	-	1			1
GCA	-	-	1			1
GCG	-	-		1		1
GGC	-	-	1			1
GTG	-	-	1			1
TCG	-	-	1			1
ATCA	-	1				1
AAAAC	1					1
AGTTT	1					1
CCACG	1					1
CCCGG	1					1
CGCCG	1					1
CGGCG	1					1
GGATT		1				1
GGCGC	1					1
CAGGCG	1					1
CCGGAG		1				1
CGGCCG	1					1
CTGGTG	1					1
GAAGTC	1					1
GATACC	1					1
GTGGAA	1					1
TCAGCG	1					1
TGCGGC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	1		1
CG/CG	-	-	-	5	1	6
ACC/GGT	-	-	2			2
ACG/CGT	-	-	1			1
AGC/CTG	-	-	2			2
CCG/CGG	-	-	4	1		5
AATC/ATTG	-	1				1
AAAAC/GTTTT	1					1
AAACT/AGTTT	1					1
AATCC/ATTGG		1				1
ACGCC/CGTGG	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACCGAT/ATCGGT	1					1
ACGCTG/AGCGTC	1					1
AGCCGC/CGGCTG	1					1
AGCCGG/CCGGCT		1				1
AGGCGC/CCTGCG	1					1
CCGCGG/CCGCGG	1					1
