Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-41/megassr/results/hub_GCA_043520235.1/fasta/hub_GCA_043520235.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              115
Total size of examined sequences (bp):           5659577
Total number of identified SSRs:                 41
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	15
5	8
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2	1	3
GC	-	-	-	2		2
CAG	-	-	2			2
CCA	-	-	1			1
CCG	-	-	2			2
CGG	-	-	3			3
CTG	-	-	1			1
GCC	-	-	2			2
GCG	-	-	1			1
GGC	-	-		1		1
GTC	-	-		1		1
TCG	-	-	1			1
AATAA	1					1
ATAAA	1					1
CCAAT	1					1
CCCGG	1					1
CGCGG	1					1
CGTGG	1					1
CTGAC	1					1
GGCGC	1					1
AATGGC	1					1
ACTTCA	1					1
CAGCAC	1					1
CCGGAG		1				1
CTGGTG	1					1
GAAGTC	1					1
GACGAA	1					1
GCAGGA		1				1
GGCCAG	1					1
GTGAGG		1				1
GTGGAA	1					1
TGCTGA	1					1
TGTTCC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	4	1	5
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1	1		2
AGC/CTG	-	-	3			3
CCG/CGG	-	-	8	1		9
AAAAT/ATTTT	2					2
AATCC/ATTGG	1					1
ACCTG/AGGTC	1					1
ACGCC/CGTGG	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	2					2
AACAGG/CCTGTT	1					1
AACTTC/AAGTTG	1					1
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
AATGGC/ATTGCC	1					1
ACCAGC/CTGGTG	2					2
ACCCTC/AGGGTG		1				1
AGCAGG/CCTGCT		1				1
AGCATC/ATGCTG	1					1
AGCCGG/CCGGCT		1				1
AGGGCC/CCCTGG	1					1
