Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-37/megassr/results/hub_GCA_043520095.1/fasta/hub_GCA_043520095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              33
Total size of examined sequences (bp):           5279094
Total number of identified SSRs:                 56
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	19
5	7
6	21

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	4	2				6
GC	-	-	-	3					3
CAC	-	-	1						1
CCG	-	-	3						3
CGA	-	-	1						1
CGC	-	-	1	1					2
CGG	-	-	3						3
CTG	-	-	1						1
GAC	-	-	1						1
GCA	-	-	2						2
GCC	-	-	3						3
GCG	-	-	1						1
GGC	-	-	1						1
CCACG	1								1
CGCCG	1								1
CGCGC	1								1
CGCGG	2								2
GCGCC	1								1
TCCCC	1								1
AGGCGA					1				1
CAGACG	1								1
CAGCGC	1								1
CAGCTC	1								1
CCAGCA	1								1
CCAGGC	1								1
CGCTGG	1								1
CGTTTG	1								1
CTGGTG	1								1
GAAGTC	1								1
GACCAT								1	1
GACGAA	1								1
GAGGCG	1								1
GAGTCG	1								1
GCAGCT	1								1
GCTCCG		1							1
GGCGAT	1								1
TCAGGG	1								1
TCGGAG	1								1
TGTTGC	1								1
TTCCAC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	7	2				9
ACC/GGT	-	-	1						1
ACG/CGT	-	-	2						2
AGC/CTG	-	-	3						3
CCG/CGG	-	-	12	1					13
ACGCC/CGTGG	1								1
AGGGG/CCCCT	1								1
CCGCG/CGCGG	5								5
AAACGC/CGTTTG	1								1
AACAGC/CTGTTG	1								1
AAGACG/CGTCTT	1								1
AAGGCG/CCTTCG					1				1
AAGTCG/ACTTCG	1								1
AAGTGG/ACTTCC	1								1
ACCAGC/CTGGTG	2								2
ACCATG/ATGGTC								1	1
ACCCTG/AGGGTC	1								1
ACGCAG/CGTCTG	1								1
ACTCCG/AGTCGG	2								2
AGCCGG/CCGGCT		1							1
AGCGCC/CGCTGG	2								2
AGCTCC/AGCTGG	1								1
AGCTGC/AGCTGC	1								1
AGGCCC/CCTGGG	1								1
AGGCGG/CCGCCT	1								1
ATCGCC/ATGGCG	1								1
