Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-67/megassr/results/hub_GCA_043086785.1/fasta/hub_GCA_043086785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              140
Total size of examined sequences (bp):           6816172
Total number of identified SSRs:                 47
Number of SSR containing sequences:              33
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	5
4	1
5	10
6	29

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	1						1
GC	-	-	-	1						1
CAC	-	-	1							1
CGG	-	-	1							1
GCG	-	-	2							2
GGT	-	-	1							1
GCAT	-		1							1
CGATG	1									1
CGCCG	3									3
CGCGC	1									1
CGGCG	1		1							2
GCGGC	1									1
GGCGA	1									1
GGCGC	1									1
ACAGCG	1									1
CAACGA	1									1
CAGCGC	1									1
CAGGAA	1									1
CCAGGG	2									2
CCGAGC				1						1
CCGAGG	1									1
CCGCGC	1									1
CCGTGA			1							1
CCTGAC	1									1
CCTGGG	1									1
CGCCAC	1									1
CGCCAG	1									1
CGCCCT	1									1
CGCCGA				1						1
CGCCGG	1									1
CGTGAT									1	1
GACAGG				1						1
GCCCAG		1								1
GCGCCT	1									1
GGCAGG		1								1
GGCCAT	1									1
GGCCTT	1									1
GGCTCG			1							1
GGTGGC	1									1
GTCGGA	1									1
GTTGGC						1				1
TGGTCG				1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	2						2
ACC/GGT	-	-	2							2
CCG/CGG	-	-	3							3
ATGC/ATGC	-		1							1
AGGCG/CCTCG	1									1
ATCGC/ATGCG	1									1
CCGCG/CGCGG	7		1							8
AACAGG/CCTGTT	1									1
AACGAC/CGTTGT	1									1
AACGCC/CGTTGG						1				1
AAGGCC/CCTTGG	1									1
ACAGCG/CGCTGT	1									1
ACAGGG/CCCTGT				1						1
ACCACG/CGTGGT				1						1
ACCCTG/AGGGTC	1									1
ACCGCC/CGGTGG	2									2
ACCGTG/ACGGTC			1							1
ACGATC/ATCGTG									1	1
ACGCCG/CGGCGT				1						1
ACTCCG/AGTCGG	1									1
AGCCCG/CGGGCT			1	1						2
AGCGCC/CGCTGG	2									2
AGGCCC/CCTGGG	1	1								2
AGGCCG/CCTCGG	1									1
AGGCGC/CCTGCG	1									1
AGGGCC/CCCTGG	2									2
AGGGCG/CCCTCG	1									1
AGGGGC/CCCCTG		1								1
ATGGCC/ATGGCC	1									1
CCCGCG/CGCGGG	1									1
CCGGCG/CCGGCG	1									1
