Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-64/megassr/results/hub_GCA_043086575.1/fasta/hub_GCA_043086575.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              74
Total size of examined sequences (bp):           6408359
Total number of identified SSRs:                 42
Number of SSR containing sequences:              24
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	7
5	10
6	23

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	1										1
GC	-	-	-	1										1
CAC	-	-	1											1
CCG	-	-	1											1
CGC	-	-	1											1
CGG	-	-	2											2
GCG	-	-	1											1
GGT	-	-	1											1
CCACC	1													1
CGCCG	3													3
CGCGC	1													1
CGGCG	1													1
CTCGC	1													1
GCGCC	1													1
GCGGC	2													2
AGCGCC		1												1
ATCGTG		1												1
CCAGCG	1													1
CCAGGG	1													1
CCGAGC					1									1
CCGAGG	1													1
CCTGAC	1													1
CCTGGG	2													2
CGCCCT	1													1
CGCTGG	1													1
CGCTGT	1													1
CGGCGC	1													1
GCAGGC	1													1
GCCAGG	1													1
GCGCCG	1													1
GCGCCT	1													1
GGCCAT	1													1
GGCCTT	1													1
GGCTCG													1	1
GTCACG			1											1
GTTGGC											1			1
TGTTCC	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	2										2
ACC/GGT	-	-	2											2
CCG/CGG	-	-	5											5
ACCCC/GGGGT	1													1
AGGCG/CCTCG	1													1
CCGCG/CGCGG	8													8
AACAGG/CCTGTT	1													1
AACGCC/CGTTGG											1			1
AAGGCC/CCTTGG	1													1
ACAGCG/CGCTGT	1													1
ACCCTG/AGGGTC	1													1
ACCGTG/ACGGTC			1											1
ACGATC/ATCGTG		1												1
AGCCCG/CGGGCT					1								1	2
AGCGCC/CGCTGG	2	1												3
AGGCCC/CCTGGG	2													2
AGGCCG/CCTCGG	1													1
AGGCGC/CCTGCG	2													2
AGGGCC/CCCTGG	2													2
AGGGCG/CCCTCG	1													1
ATGGCC/ATGGCC	1													1
CCGGCG/CCGGCG	2													2
