Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-63/megassr/results/hub_GCA_043086565.1/fasta/hub_GCA_043086565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              105
Total size of examined sequences (bp):           6459034
Total number of identified SSRs:                 52
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  17
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	8
5	12
6	30

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	1									1
GC	-	-	-	1									1
CAC	-	-	1										1
CCG	-	-	1										1
CGC	-	-	1										1
CGG	-	-	2										2
GCC	-	-	1										1
GCG	-	-	1										1
GGT	-	-	1										1
CCAGG	1												1
CGCCG	2												2
CGCGC	1												1
CGGCG	1												1
GCGCC	1												1
GCGGC	2												2
GGCAG	1												1
GGCGA	1												1
GGCGC	1												1
TCCCT		1											1
AAGGCC	1												1
ACAGCC												1	1
ATCACG			1										1
CACGAA	1												1
CAGGAA	1												1
CCAGCA		1											1
CCAGGG	1												1
CCGAGC			1										1
CCGAGG	1												1
CCGCGC		1											1
CCGTGA			1										1
CCTGAC	1												1
CCTGGG	1												1
CGCCAG	1												1
CGCCCT	1												1
CGCTGT	1												1
CGGCGC	1												1
CGTCGG	1												1
CGTTGG						1							1
GCAGGC	1												1
GCCTGC	1												1
GCGCCT	1												1
GCTCCC	1												1
GGCCAT	1												1
GGCGCT	2	1											3
GGCTCG					1								1
GGTGGA	1												1
GTCGGC	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	2									2
ACC/GGT	-	-	2										2
CCG/CGG	-	-	6										6
AAGGG/CCCTT		1											1
AGGCC/CCTGG	1												1
AGGCG/CCTCG	1												1
AGGGC/CCCTG	1												1
CCGCG/CGCGG	8												8
AACACG/CGTGTT	1												1
AACAGG/CCTGTT	1												1
AACGCC/CGTTGG						1							1
AAGGCC/CCTTGG	1												1
ACAGCC/CTGTGG												1	1
ACAGCG/CGCTGT	1												1
ACCAGC/CTGGTG		1											1
ACCCTG/AGGGTC	1												1
ACCGTG/ACGGTC			1										1
ACCTCC/AGGTGG	1												1
ACGATC/ATCGTG			1										1
ACGCCG/CGGCGT	2												2
AGCCCG/CGGGCT			1		1								2
AGCGCC/CGCTGG	3	1											4
AGCGGG/CCCGCT	1												1
AGGCCC/CCTGGG	1												1
AGGCCG/CCTCGG	1												1
AGGCGC/CCTGCG	3												3
AGGGCC/CCCTGG	1												1
AGGGCG/CCCTCG	1												1
ATGGCC/ATGGCC	1												1
CCCGCG/CGCGGG		1											1
CCGGCG/CCGGCG	1												1
