Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-59/megassr/results/hub_GCA_043086385.1/fasta/hub_GCA_043086385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              102
Total size of examined sequences (bp):           6512695
Total number of identified SSRs:                 51
Number of SSR containing sequences:              28
Number of sequences containing more than 1 SSR:  16
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	8
5	12
6	29

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	1			1
GC	-	-	-	1			1
CAC	-	-	1				1
CCG	-	-	1				1
CGC	-	-	1				1
CGG	-	-	2				2
GCC	-	-	1				1
GCG	-	-	1				1
GGT	-	-	1				1
CCAGG	1						1
CGCCG	2						2
CGCGC	1						1
CGGCG	1						1
GCGCC	1						1
GCGGC	2						2
GGCAG	1						1
GGCGA	1						1
GGCGC	1						1
TCCCT		1					1
AAGGCC	1						1
ATCACG			1				1
CACGAA	1						1
CAGGAA	1						1
CCAGCA		1					1
CCAGGG	1						1
CCGAGC			1				1
CCGAGG	1						1
CCGCGC		1					1
CCGTGA			1				1
CCTGAC	1						1
CCTGGG	1						1
CGCCAG	1						1
CGCCCT	1						1
CGCTGT	1						1
CGGCGC	1						1
CGTCGG	1						1
CGTTGG						1	1
GCAGGC	1						1
GCCTGC	1						1
GCGCCT	1						1
GCTCCC	1						1
GGCCAT	1						1
GGCGCT	2	1					3
GGCTCG					1		1
GGTGGA	1						1
GTCGGC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	2			2
ACC/GGT	-	-	2				2
CCG/CGG	-	-	6				6
AAGGG/CCCTT		1					1
AGGCC/CCTGG	1						1
AGGCG/CCTCG	1						1
AGGGC/CCCTG	1						1
CCGCG/CGCGG	8						8
AACACG/CGTGTT	1						1
AACAGG/CCTGTT	1						1
AACGCC/CGTTGG						1	1
AAGGCC/CCTTGG	1						1
ACAGCG/CGCTGT	1						1
ACCAGC/CTGGTG		1					1
ACCCTG/AGGGTC	1						1
ACCGTG/ACGGTC			1				1
ACCTCC/AGGTGG	1						1
ACGATC/ATCGTG			1				1
ACGCCG/CGGCGT	2						2
AGCCCG/CGGGCT			1		1		2
AGCGCC/CGCTGG	3	1					4
AGCGGG/CCCGCT	1						1
AGGCCC/CCTGGG	1						1
AGGCCG/CCTCGG	1						1
AGGCGC/CCTGCG	3						3
AGGGCC/CCCTGG	1						1
AGGGCG/CCCTCG	1						1
ATGGCC/ATGGCC	1						1
CCCGCG/CGCGGG		1					1
CCGGCG/CCGGCG	1						1
