Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-52/megassr/results/hub_GCA_043084225.1/fasta/hub_GCA_043084225.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              88
Total size of examined sequences (bp):           6401842
Total number of identified SSRs:                 47
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	9
5	12
6	24

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
GC	-	-	-	2								2
CAC	-	-	1									1
CCG	-	-	1									1
CGC	-	-	1									1
CGG	-	-	3									3
GCG	-	-	1									1
GGT	-	-	1									1
GTG	-	-						1				1
CCACC	1											1
CGCCG	3											3
CGCGC	1											1
CGGCG	1											1
CTCGC	1											1
CTTCC			1									1
GCCGT	1											1
GCGGC	2											2
GGCGC	1											1
ACAGCC									1			1
ACAGCG	1											1
AGCGCC	1											1
CACGAA	1											1
CAGGAA	1											1
CCAGCG	1											1
CCAGGG	1											1
CCGAGC		1										1
CCGAGG	1											1
CCGTGA							1					1
CCTGAC	1											1
CCTGGG	1											1
CGCCAG	1											1
CGCCGA	1											1
CGTGAT											1	1
GCCTGC	2											2
GCGCCG	1											1
GCGCCT	1											1
GGCCAT	1											1
GGCCTT	1											1
GGCTCG							1					1
GTTGGC									1			1
TCGGCG	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	2								2
ACC/GGT	-	-	2					1				3
CCG/CGG	-	-	6									6
AAGGG/CCCTT			1									1
ACCCC/GGGGT	1											1
ACGGC/CCGTG	1											1
AGGCG/CCTCG	1											1
CCGCG/CGCGG	8											8
AACACG/CGTGTT	1											1
AACAGG/CCTGTT	1											1
AACGCC/CGTTGG									1			1
AAGGCC/CCTTGG	1											1
ACAGCC/CTGTGG									1			1
ACAGCG/CGCTGT	1											1
ACCCTG/AGGGTC	1											1
ACCGTG/ACGGTC							1					1
ACGATC/ATCGTG											1	1
ACGCCG/CGGCGT	2											2
AGCCCG/CGGGCT		1					1					2
AGCGCC/CGCTGG	3											3
AGGCCC/CCTGGG	1											1
AGGCCG/CCTCGG	1											1
AGGCGC/CCTGCG	3											3
AGGGCC/CCCTGG	1											1
ATGGCC/ATGGCC	1											1
CCGGCG/CCGGCG	1											1
