Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-49/megassr/results/hub_GCA_043084065.1/fasta/hub_GCA_043084065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              116
Total size of examined sequences (bp):           6581834
Total number of identified SSRs:                 47
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  15
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	10
5	10
6	25

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
GC	-	-	-	2						2
CAC	-	-						1		1
CCG	-	-	2							2
CGG	-	-	2							2
GCG	-	-	2							2
GGC	-	-		1						1
GGT	-	-	1							1
GTG	-	-	1							1
CCTGC	1									1
CGCCG	3									3
CGCGC	1									1
CGGCG	1									1
CTCGC	1									1
GCGGC	2									2
GGCGC	1									1
CACGAA			1							1
CAGGAA	1									1
CCAGCA		1								1
CCAGCG	1									1
CCAGGG	1									1
CCGAGC		1								1
CCGAGG	1									1
CCTGAC	1									1
CCTGGC	1									1
CCTGGG	1									1
CGCCCT	1									1
CGCCGA				1						1
CGCGGG	1									1
CGCTGG	1									1
CGCTGT	1									1
CGTCGG			1							1
CGTGAT			1							1
CTCCAG	1									1
GCAGGC	1									1
GCGCCG	2									2
GCGCTG	1									1
GGCCAT	1									1
GGCCTT	1									1
GGCTCG									1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	2						2
ACC/GGT	-	-	2					1		3
CCG/CGG	-	-	6	1						7
AGGCG/CCTCG	1									1
AGGGC/CCCTG	1									1
CCGCG/CGCGG	8									8
AACACG/CGTGTT			1							1
AACAGG/CCTGTT	1									1
AAGGCC/CCTTGG	1									1
ACAGCG/CGCTGT	1									1
ACCAGC/CTGGTG		1								1
ACCCTG/AGGGTC	1									1
ACGATC/ATCGTG			1							1
ACGCCG/CGGCGT			1	1						2
AGCCCG/CGGGCT		1							1	2
AGCGCC/CGCTGG	3									3
AGCTCC/AGCTGG	1									1
AGGCCC/CCTGGG	1									1
AGGCCG/CCTCGG	1									1
AGGCGC/CCTGCG	1									1
AGGGCC/CCCTGG	2									2
AGGGCG/CCCTCG	1									1
ATGGCC/ATGGCC	1									1
CCCGCG/CGCGGG	1									1
CCGGCG/CCGGCG	2									2
