Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-48/megassr/results/hub_GCA_043084045.1/fasta/hub_GCA_043084045.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              67
Total size of examined sequences (bp):           6358429
Total number of identified SSRs:                 46
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	7
4	1
5	10
6	26

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
GC	-	-	-	2					2
ATC	-	-		1					1
CAC	-	-	1						1
CGC	-	-	1						1
CGG	-	-	2						2
GCG	-	-	1						1
GGT	-	-	1						1
GCTG	-	1							1
CGCCG	4								4
CGCGC	1								1
CGGCG	1								1
CTCGC	1								1
GCCTG	1								1
GCGGC	1								1
GGCGC	1								1
ACAGCG	1								1
CAGCGC	1								1
CAGGAA	1								1
CCAGCG	1								1
CCAGGG	1								1
CCCCTT	1								1
CCGAGC					1				1
CCGAGG	1								1
CCTGAC	1								1
CGCCCT	1								1
CGCCGA		1							1
CGCTGG	1								1
GCCCAG		1							1
GCCCTG	1								1
GCCTGC	1								1
GCGCCG	2								2
GCGCCT	1								1
GCGCTA	1								1
GGCCAT	1								1
GGCCCA	1								1
GGCCTT	1								1
GGCTCG								1	1
GTGGCG	1								1
GTTGGC			1						1
TGCTGG		1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	2					2
ACC/GGT	-	-	2						2
ATC/ATG	-	-		1					1
CCG/CGG	-	-	4						4
AGCC/CTGG	-	1							1
AGGCC/CCTGG	1								1
AGGCG/CCTCG	1								1
CCGCG/CGCGG	8								8
AACAGG/CCTGTT	1								1
AACGCC/CGTTGG			1						1
AAGGCC/CCTTGG	1								1
AAGGGG/CCCCTT	1								1
ACAGCG/CGCTGT	1								1
ACCAGC/CTGGTG		1							1
ACCCTG/AGGGTC	1								1
ACCGCC/CGGTGG	1								1
ACGCCG/CGGCGT		1							1
AGCCCG/CGGGCT					1			1	2
AGCGCC/CGCTGG	3								3
AGCGCT/AGCGCT	1								1
AGGCCC/CCTGGG	1	1							2
AGGCCG/CCTCGG	1								1
AGGCGC/CCTGCG	2								2
AGGGCC/CCCTGG	2								2
AGGGCG/CCCTCG	1								1
ATGGCC/ATGGCC	1								1
CCGGCG/CCGGCG	2								2
