Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-46/megassr/results/hub_GCA_043083945.1/fasta/hub_GCA_043083945.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              127
Total size of examined sequences (bp):           6741609
Total number of identified SSRs:                 46
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  15
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	9
5	11
6	23

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
GC	-	-	-	2						2
TG	-	-	-	1						1
CAC	-	-	1			1				2
CGG	-	-	1							1
GCC	-	-	1							1
GCG	-	-	3							3
GGT	-	-	2							2
CGCCG	3									3
CGCGC	1									1
CGGCG	1									1
GCCTG				1						1
GCGGC	2									2
GGCGA	1									1
GGCGC	1									1
TCTGC			1							1
AGCGCC	1									1
CAGGAA	1									1
CCAGCG	1									1
CCAGGG	1									1
CCGAGC			1							1
CCTCGG	1									1
CCTGAC	1									1
CCTGGG	1									1
CGCCAC	1									1
CGCTGG	1									1
CGCTGT	1									1
CGTCGG					1					1
CGTGAT			1							1
GCAGGC	1									1
GCCTGC	1									1
GCCTGG	1									1
GCGCCG	1									1
GCGCCT	1									1
GGCCAT	1									1
GGCCTT	1									1
GGCTCG									1	1
GGGCCA	1									1
GTTGGC							1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AC/GT	-	-	-	1						1
CG/CG	-	-	-	2						2
ACC/GGT	-	-	3			1				4
CCG/CGG	-	-	5							5
AGAGC/CTCTG			1							1
AGGCC/CCTGG				1						1
AGGCG/CCTCG	1									1
CCGCG/CGCGG	8									8
AACAGG/CCTGTT	1									1
AACGCC/CGTTGG							1			1
AAGGCC/CCTTGG	1									1
ACAGCG/CGCTGT	1									1
ACCCTG/AGGGTC	1									1
ACCGCC/CGGTGG	1									1
ACGATC/ATCGTG			1							1
ACGCCG/CGGCGT					1					1
AGCCCG/CGGGCT			1						1	2
AGCGCC/CGCTGG	3									3
AGGCCC/CCTGGG	2									2
AGGCCG/CCTCGG	1									1
AGGCGC/CCTGCG	3									3
AGGGCC/CCCTGG	2									2
ATGGCC/ATGGCC	1									1
CCGGCG/CCGGCG	1									1
