Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-42/megassr/results/hub_GCA_043081445.1/fasta/hub_GCA_043081445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              84
Total size of examined sequences (bp):           6463217
Total number of identified SSRs:                 42
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	9
5	10
6	22

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
GC	-	-	-	1							1
CAC	-	-	2		1						3
CGC	-	-	1								1
CGG	-	-	3								3
GCG	-	-	1								1
TGC	-	-	1								1
CGCCG	2										2
CGCGC	2										2
GCCGC	1										1
GCGGC	2										2
GGAAG	1										1
GGCGA	1										1
GGCGC	1										1
ACAGCG	1										1
AGCGCC		1									1
ATCACG			1								1
CAGGAA	1										1
CCAGCG	1										1
CCAGGG	1										1
CCGAGC		1									1
CCGAGG	1										1
CCTGAC	1										1
CCTGGG	1										1
CGAGGG	1										1
CGCCGA		1									1
CGCTGG	1										1
CGGCGC	1										1
GCCTGC	1										1
GCGCCT	1										1
GGCCAT	1										1
GGCCTT	1										1
GGCTCG							1				1
GTTGGC								1			1
TGGCTG										1	1
TGTCCT	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	1							1
ACC/GGT	-	-	2		1						3
AGC/CTG	-	-	1								1
CCG/CGG	-	-	5								5
AAGGG/CCCTT	1										1
AGGCG/CCTCG	1										1
CCGCG/CGCGG	8										8
AACAGG/CCTGTT	1										1
AACGCC/CGTTGG								1			1
AAGGAC/CCTTGT	1										1
AAGGCC/CCTTGG	1										1
ACAGCC/CTGTGG										1	1
ACAGCG/CGCTGT	1										1
ACCCTG/AGGGTC	1										1
ACGATC/ATCGTG			1								1
ACGCCG/CGGCGT		1									1
AGCCCG/CGGGCT		1					1				2
AGCGCC/CGCTGG	2	1									3
AGGCCC/CCTGGG	1										1
AGGCCG/CCTCGG	1										1
AGGCGC/CCTGCG	2										2
AGGGCC/CCCTGG	1										1
AGGGCG/CCCTCG	1										1
ATGGCC/ATGGCC	1										1
CCGGCG/CCGGCG	1										1
