Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-41/megassr/results/hub_GCA_043081385.1/fasta/hub_GCA_043081385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              79
Total size of examined sequences (bp):           6293216
Total number of identified SSRs:                 54
Number of SSR containing sequences:              28
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
5	12
6	32

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
GC	-	-	-	2	1				3
CAC	-	-	1						1
CCG	-	-	1						1
CGC	-	-	1						1
CGG	-	-	2						2
GCG	-	-	1						1
GGT	-	-	1						1
CCTGG	1								1
CGCCG	2								2
CGCGC	1								1
CGCGG	1								1
CGGCG	1								1
CTCGC	1								1
GCGCC	1								1
GCGGC	2								2
GGCGC	2								2
ACAGCG	1								1
ACCACG	1								1
ATCACG					1				1
ATGGCC	1								1
CAGCAT	1								1
CAGCGC	1								1
CAGGAA	1								1
CCAGCA		1							1
CCAGCG	1								1
CCAGGG	1								1
CCGAGC			1						1
CCGAGG	1								1
CCGCCC	1								1
CCGTGA			1						1
CCTGAC	1								1
CCTGGG	1								1
CGCCAC	1								1
CGCCCT		1							1
CGCCGA	1								1
CGCCGG	2								2
CGCTGG	1								1
CTGGCG						1			1
GAACAT			1						1
GCCCAG		1							1
GGCCTT	1								1
GGCGCG	1								1
GGCGCT	1								1
GGCTCG					1				1
GTTGGC						1			1
TGGCTG								1	1
TTGTCG	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	2	1				3
ACC/GGT	-	-	2						2
CCG/CGG	-	-	5						5
AGGCC/CCTGG	1								1
AGGCG/CCTCG	1								1
CCGCG/CGCGG	10								10
AACAGG/CCTGTT	1								1
AACATG/ATGTTC			1						1
AACGAC/CGTTGT	1								1
AACGCC/CGTTGG						1			1
AAGGCC/CCTTGG	1								1
ACAGCC/CTGTGG								1	1
ACAGCG/CGCTGT	1								1
ACCACG/CGTGGT	1								1
ACCAGC/CTGGTG		1							1
ACCCTG/AGGGTC	1								1
ACCGCC/CGGTGG	1								1
ACCGTG/ACGGTC			1						1
ACGATC/ATCGTG					1				1
ACGCCG/CGGCGT	1								1
AGCATC/ATGCTG	1								1
AGCCCG/CGGGCT			1		1				2
AGCGCC/CGCTGG	4					1			5
AGGCCC/CCTGGG	1	1							2
AGGCCG/CCTCGG	1								1
AGGGCC/CCCTGG	1								1
AGGGCG/CCCTCG		1							1
ATGGCC/ATGGCC	1								1
CCCCCG/CGGGGG	1								1
CCCGCG/CGCGGG	1								1
CCGGCG/CCGGCG	2								2
