Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-31/megassr/results/hub_GCA_042158565.1/fasta/hub_GCA_042158565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6465612
Total number of identified SSRs:                 50
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	8
5	10
6	30

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
GC	-	-	-	2												2
CAC	-	-	1												1	2
CGC	-	-	1													1
CGG	-	-	3													3
GCC	-	-	1													1
GTG	-	-	1													1
CCGCG	1															1
CGCCG	2															2
CGCGC	1															1
CGGCG	1															1
GCCGC	1															1
GCGCG	1															1
GGCGA	1															1
GGCGC	1															1
GGTGG	1															1
AAGGCC	1															1
ACAGCG	1															1
ATCACG								1								1
ATGGCC	1															1
CAACGC								1								1
CAGCGC	1															1
CAGGAA	1															1
CAGGCG	1															1
CCAGCA		1														1
CCAGGG	2															2
CCGAGC						1										1
CCGAGG	1															1
CCTGGC	1															1
CCTGGG	1															1
CGCCGA		1														1
CGCTGG	1															1
CGTGTT			1													1
GCCCAG		1														1
GCCGAA	1															1
GGCGCT	1															1
GGCGGA	1															1
GGCTCG						1										1
GGCTTG	1															1
GGGCAG	1															1
GGGCAT	1															1
GGTAGT	1															1
GGTGGC	1															1
GTCAGG	1															1
TGGCTG						1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG/CG	-	-	-	2												2
ACC/GGT	-	-	2												1	3
CCG/CGG	-	-	5													5
ACCCC/GGGGT	1															1
AGGCG/CCTCG	1															1
CCGCG/CGCGG	8															8
AACACG/CGTGTT			1													1
AACAGG/CCTGTT	1															1
AACGCC/CGTTGG								1								1
AAGCCC/CTTGGG	1															1
AAGCCG/CGGCTT	1															1
AAGGCC/CCTTGG	1															1
ACAGCC/CTGTGG						1										1
ACAGCG/CGCTGT	1															1
ACCACT/AGTGGT	1															1
ACCAGC/CTGGTG		1														1
ACCCTG/AGGGTC	1															1
ACCGCC/CGGTGG	1															1
ACGATC/ATCGTG								1								1
ACGCCG/CGGCGT		1														1
AGCCCG/CGGGCT						2										2
AGCGCC/CGCTGG	3															3
AGGCCC/CCTGGG	1	1														2
AGGCCG/CCTCGG	1															1
AGGCGC/CCTGCG	1															1
AGGCGG/CCGCCT	1															1
AGGGCC/CCCTGG	3															3
AGGGGC/CCCCTG	1															1
ATGCCC/ATGGGC	1															1
ATGGCC/ATGGCC	1															1
